Joel S. Bader

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 5

Top Topics

Hypothesis Tests

Spatial And Temporal Information

Association Studies

Linkage Disequilibrium

Top Venues

Pacific Symposium on Biocomputing

PLoS Comput. Biol.

Publications

Jitong Cai, Jianan Zhan, Dan E. Arking, Joel S. Bader
Priors, population sizes, and power in genome-wide hypothesis tests. BMC Bioinform. 24 (1) (2023)
Zaki Hasnain, Andrew K. Fraser, Dan Georgess, Alex Choi, Paul Macklin, Joel S. Bader, Shelly R. Peyton, Andrew J. Ewald, Paul K. Newton
OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics. Bioinform. 36 (10) (2020)
Veena Padmanaban, Yohannes Tsehay, Kevin J. Cheung, Andrew J. Ewald, Joel S. Bader
Between-tumor and within-tumor heterogeneity in invasive potential. PLoS Comput. Biol. 16 (1) (2020)
Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader
BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinform. 32 (22) (2016)
Kun Yang, Giovanni Stracquadanio, Jingchuan Luo, Jef D. Boeke, Joel S. Bader
BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts. Bioinform. 32 (6) (2016)
Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader
Session Introduction. Pacific Symposium on Biocomputing (2013)
Yongjin Park, Joel S. Bader
How networks change with time. Bioinform. 28 (12) (2012)
Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader
Session Introduction. Pacific Symposium on Biocomputing (2012)
Faris Alqadah, Joel S. Bader, Rajul Anand, Chandan K. Reddy
Query-based Biclustering using Formal Concept Analysis. SDM (2012)
Yongjin Park, Joel S. Bader
Resolving the structure of interactomes with hierarchical agglomerative clustering. BMC Bioinform. 12 (S-1) (2011)
Corban G. Rivera, Rachit Vakil, Joel S. Bader
NeMo: Network Module identification in Cytoscape. BMC Bioinform. 11 (S-1) (2010)
Balaji Veeramani, Joel S. Bader
Predicting functional associations from metabolism using bi-partite network algorithms. BMC Syst. Biol. 4 (2010)
Hailiang Huang, Joel S. Bader
Precision and recall estimates for two-hybrid screens. Bioinform. 25 (3) (2009)
Carmen Kut, Vahid Golkhou, Joel S. Bader
Analytical approximations for the amplitude and period of a relaxation oscillator. BMC Syst. Biol. 3 (2009)
Balaji Veeramani, Joel S. Bader
Metabolic Flux Correlations, Genetic Interactions, and Disease. J. Comput. Biol. 16 (2) (2009)
Sarah M. Richardson, Brian S. Olson, Jessica S. Dymond, Randal C. Burns, Srinivasan Chandrasegaran, Jef D. Boeke, Amarda Shehu, Joel S. Bader
Automated Design of Assemblable, Modular, Synthetic Chromosomes. PPAM (2) (2009)
Hailiang Huang, Bruno Jedynak, Joel S. Bader
Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps. PLoS Comput. Biol. 3 (11) (2007)
L. Angela Liu, Joel S. Bader
Ab initio Prediction of Transcription Factor Binding Sites. Pacific Symposium on Biocomputing (2007)
Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader
Probabilistic Paths for Protein Complex Inference. Systems Biology and Computational Proteomics (2006)
Ping Ye, Brian D. Peyser, Forrest A. Spencer, Joel S. Bader
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast. BMC Bioinform. 6 (2005)
Yan Qi, Ping Ye, Joel S. Bader
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality. BMC Bioinform. 6 (2005)
Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky
Probabilistic inference of molecular networks from noisy data sources. Bioinform. 20 (8) (2004)
Joel S. Bader
Greedily building protein networks with confidence. Bioinform. 19 (15) (2003)