Cesim Erten

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 6

Top Topics

Protein Interaction

Mutual Exclusion

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Ibrahim Berber, Cesim Erten, Hilal Kazan
Predator: Predicting the Impact of Cancer Somatic Mutations on Protein-Protein Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Cesim Erten, Aissa Houdjedj, Hilal Kazan, Ahmed Amine Taleb Bahmed
PersonaDrive: a method for the identification and prioritization of personalized cancer drivers. Bioinform. 38 (13) (2022)
Cesim Erten, Aissa Houdjedj, Hilal Kazan
Ranking cancer drivers via betweenness-based outlier detection and random walks. BMC Bioinform. 22 (1) (2021)
Rafsan Ahmed, Ilyes Baali, Cesim Erten, Evis Hoxha, Hilal Kazan
MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules. Bioinform. 36 (3) (2020)
Ferhat Alkan, Türker Bíyíkoglu, Marc Demange, Cesim Erten
Structure of conflict graphs in constraint alignment problems and algorithms. Discret. Math. Theor. Comput. Sci. 21 (4) (2019)
Ferhat Alkan, Cesim Erten
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications. Bioinform. 33 (4) (2017)
Ferhat Alkan, Cesim Erten
SiPAN: simultaneous prediction and alignment of protein-protein interaction networks. Bioinform. 31 (14) (2015)
Ferhat Alkan, Cesim Erten
BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks. Bioinform. 30 (4) (2014)
Ferhat Alkan, Türker Bíyíkoglu, Marc Demange, Cesim Erten
Constrained Alignments of a Pair of Graphs. CoRR (2014)
Ahmet Emre Aladag, Cesim Erten
SPINAL: scalable protein interaction network alignment. Bioinform. 29 (7) (2013)
Gamze Abaka, Türker Bíyíkoglu, Cesim Erten
CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways. Bioinform. 29 (13) (2013)
Ulrik Brandes, Cesim Erten, Alejandro Estrella-Balderrama, J. Joseph Fowler, Fabrizio Frati, Markus Geyer, Carsten Gutwenger, Seok-Hee Hong, Michael Kaufmann, Stephen G. Kobourov, Giuseppe Liotta, Petra Mutzel, Antonios Symvonis
Colored Simultaneous Geometric Embeddings and Universal Pointsets. Algorithmica 60 (3) (2011)
Ahmet Emre Aladag, Cesim Erten, Melih Sözdinler
Reliability-Oriented bioinformatic networks visualization. Bioinform. 27 (11) (2011)
Alon Efrat, David Forrester, Anand Iyer, Stephen G. Kobourov, Cesim Erten, Ozan Kilic
Force-directed approaches to sensor localization. ACM Trans. Sens. Networks 7 (3) (2010)
Arda Cakiroglu, Cesim Erten
Fully Decentralized and Collaborative Multilateration Primitives for Uniquely Localizing WSNs. EURASIP J. Wirel. Commun. Netw. 2010 (2010)
Cesim Erten, Melih Sözdinler
Improving performances of suboptimal greedy iterative biclustering heuristics via localization. Bioinform. 26 (20) (2010)
Cesim Erten, Melih Sözdinler
Biclustering Expression Data Based on Expanding Localized Substructures. BICoB (2009)
Cesim Erten, Ömer Karatas
A robust localization framework to handle noisy measurements in wireless sensor networks. ISCIS (2009)
Arda Cakiroglu, Cesim Erten
Fully Decentralized, Collaborative Multilateration Primitives for Uniquely Localizing WSNs. WASA (2009)
Olca A. Çakiroglu, Cesim Erten, Ömer Karatas, Melih Sözdinler
Crossing minimization in weighted bipartite graphs. J. Discrete Algorithms 7 (4) (2009)
Cesim Erten, Melih Sözdinler
A Robust Biclustering Method Based on Crossing Minimization in Bipartite Graphs. Graph Drawing (2008)
Olca A. Çakiroglu, Cesim Erten, Ömer Karatas, Melih Sözdinler
Crossing Minimization in Weighted Bipartite Graphs. WEA (2007)
Peter Braß, Eowyn Cenek, Christian A. Duncan, Alon Efrat, Cesim Erten, Dan Ismailescu, Stephen G. Kobourov, Anna Lubiw, Joseph S. B. Mitchell
On simultaneous planar graph embeddings. Comput. Geom. 36 (2) (2007)
Alon Efrat, Cesim Erten, Stephen G. Kobourov
Fixed-Location Circular Arc Drawing of Planar Graphs. J. Graph Algorithms Appl. 11 (1) (2007)
Ulrik Brandes, Cesim Erten, J. Joseph Fowler, Fabrizio Frati, Markus Geyer, Carsten Gutwenger, Seok-Hee Hong, Michael Kaufmann, Stephen G. Kobourov, Giuseppe Liotta, Petra Mutzel, Antonios Symvonis
Colored Simultaneous Geometric Embeddings. COCOON (2007)
Patrick Borunda, Chris Brewer, Cesim Erten
GSPIM: graphical visualization tool for MIPS assembly programming and simulation. SIGCSE (2006)
Alon Efrat, David Forrester, Anand Iyer, Stephen G. Kobourov, Cesim Erten
Force-Directed Approaches to Sensor Localization. ALENEX (2006)
Cesim Erten, Stephen G. Kobourov
Simultaneous Embedding of Planar Graphs with Few Bends. J. Graph Algorithms Appl. 9 (3) (2005)
Cesim Erten, Stephen G. Kobourov, Vu Le, Armand Navabi
Simultaneous Graph Drawing: Layout Algorithms and Visualization Schemes. J. Graph Algorithms Appl. 9 (1) (2005)
Cesim Erten, Stephen G. Kobourov
Simultaneous Embedding of a Planar Graph and Its Dual on the Grid. Theory Comput. Syst. 38 (3) (2005)
Cesim Erten, Stephen G. Kobourov, Chandan Pitta
Morphing planar graphs. SCG (2004)
Cesim Erten, Stephen G. Kobourov
Simultaneous Embedding of Planar Graphs with Few Bends. Graph Drawing (2004)
Cesim Erten, Philip J. Harding, Stephen G. Kobourov, Kevin Wampler, Gary V. Yee
Exploring the computing literature using temporal graph visualization. Visualization and Data Analysis (2004)
Cesim Erten, Stephen G. Kobourov, Chandan Pitta
Intersection-Free Morphing of Planar Graphs. Graph Drawing (2003)
Alon Efrat, Cesim Erten, Stephen G. Kobourov
Fixed-Location Circular-Arc Drawing of Planar Graphs. Graph Drawing (2003)
Cesim Erten, Philip J. Harding, Stephen G. Kobourov, Kevin Wampler, Gary V. Yee
GraphAEL: Graph Animations with Evolving Layouts. Graph Drawing (2003)
Peter Braß, Eowyn Cenek, Christian A. Duncan, Alon Efrat, Cesim Erten, Dan Ismailescu, Stephen G. Kobourov, Anna Lubiw, Joseph S. B. Mitchell
On Simultaneous Planar Graph Embeddings. WADS (2003)
Cesim Erten, Stephen G. Kobourov, Vu Le, Armand Navabi
Simultaneous Graph Drawing: Layout Algorithms and Visualization Schemes. Graph Drawing (2003)
Christian A. Duncan, Alon Efrat, Cesim Erten, Stephen G. Kobourov, Joseph S. B. Mitchell
On Simultaneous Graph Embedding CoRR (2002)
Cesim Erten, Stephen G. Kobourov
Simultaneous Embedding of a Planar Graph and Its Dual on the Grid CoRR (2002)
Cesim Erten, Stephen G. Kobourov
Simultaneous Embedding of a Planar Graph and Its Dual on the Grid. ISAAC (2002)