Ferhat Alkan

Publication Activity (10 Years)

Years Active: 2014-2021
Publications (10 Years): 4

Top Topics

Constrained Problems

Protein Interaction

Constraint Graph

Interaction Networks

Top Venues

Database J. Biol. Databases Curation

Discret. Math. Theor. Comput. Sci.

Publications

Ferhat Alkan, Joana Silva, Eric Pintó Barberà, William J. Faller
Ribo-ODDR: oligo design pipeline for experiment-specific rRNA depletion in Ribo-seq. Bioinform. 37 (17) (2021)
Ferhat Alkan, Türker Bíyíkoglu, Marc Demange, Cesim Erten
Structure of conflict graphs in constraint alignment problems and algorithms. Discret. Math. Theor. Comput. Sci. 21 (4) (2019)
Ferhat Alkan, Cesim Erten
RedNemo: topology-based PPI network reconstruction via repeated diffusion with neighborhood modifications. Bioinform. 33 (4) (2017)
Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin
RAIN: RNA-protein Association and Interaction Networks. Database J. Biol. Databases Curation 2017 (2017)
Ferhat Alkan, Cesim Erten
SiPAN: simultaneous prediction and alignment of protein-protein interaction networks. Bioinform. 31 (14) (2015)
Ferhat Alkan, Cesim Erten
BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks. Bioinform. 30 (4) (2014)
Ferhat Alkan, Türker Bíyíkoglu, Marc Demange, Cesim Erten
Constrained Alignments of a Pair of Graphs. CoRR (2014)