Robert Küffner

Publication Activity (10 Years)

Years Active: 1999-2017
Publications (10 Years): 3

Top Topics

Microarray Data

Gene Regulatory

False Discoveries

Statistical Significance

Top Venues

Publications

Maximilian Hastreiter, Tim Jeske, Jonathan Hoser, Michael Kluge, Kaarin Ahomaa, Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, Hans-Werner Mewes, Robert Küffner
KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis. Bioinform. 33 (10) (2017)
Tobias Petri, Stefan Altmann, Ludwig Geistlinger, Ralf Zimmer, Robert Küffner
Addressing false discoveries in network inference. Bioinform. 31 (17) (2015)
Thomas Cokelaer, Mukesh Bansal, Christopher Bare, Erhan Bilal, Brian M. Bot, Elias Chaibub Neto, Federica Eduati, Mehmet Gönen, Steven M. Hill, Bruce R. Hoff, Jonathan R. Karr, Robert Küffner, Michael P. Menden, Pablo Meyer, Raquel Norel, Abhishek Pratap, Robert J. Prill, Matthew T. Weirauch, James C. Costello, Gustavo Stolovitzky, Julio Saez-Rodriguez
DREAMTools: a Python package for scoring collaborative challenges. F1000Research 4 (2015)
Robert Maier, Ralf Zimmer, Robert Küffner
A Turing test for artificial expression data. Bioinform. 29 (20) (2013)
Robert Küffner, Tobias Petri, Pegah Tavakkolkhah, Lukas Windhager, Ralf Zimmer
Inferring gene regulatory networks by ANOVA. Bioinform. 28 (10) (2012)
Haroon Naeem, Ralf Zimmer, Pegah Tavakkolkhah, Robert Küffner
Rigorous assessment of gene set enrichment tests. Bioinform. 28 (11) (2012)
Tobias Petri, Robert Küffner, Ralf Zimmer
Experiment Specific Expression Patterns. RECOMB (2011)
Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola J. Mulder, Ralf Zimmer
From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems. Bioinform. 27 (13) (2011)
Tobias Petri, Robert Küffner, Ralf Zimmer
Experiment Specific Expression Patterns. J. Comput. Biol. 18 (11) (2011)
Haroon Naeem, Robert Küffner, Gergely Csaba, Ralf Zimmer
miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinform. 11 (2010)
Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, Robert Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer
Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen. Inform. Spektrum 32 (4) (2009)
Fabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer
ProSAS: a database for analyzing alternative splicing in the context of protein structures. Nucleic Acids Res. 36 (Database-Issue) (2008)
Katrin Fundel, Robert Küffner, Ralf Zimmer
RelEx - Relation extraction using dependency parse trees. Bioinform. 23 (3) (2007)
Robert Küffner, Timo Duchrow, Katrin Fundel, Ralf Zimmer
Characterization of Protein Interactions. German Conference on Bioinformatics (2006)
Chad A. Davis, Fabian Gerick, Volker Hintermair, Caroline C. Friedel, Katrin Fundel, Robert Küffner, Ralf Zimmer
Reliable gene signatures for microarray classification: assessment of stability and performance. Bioinform. 22 (19) (2006)
Katrin Fundel, Robert Küffner, Thomas Aigner, Ralf Zimmer
Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments. German Conference on Bioinformatics (2005)
Robert Küffner, Katrin Fundel, Ralf Zimmer
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. ECCB/JBI (2005)
Hartmann J. Genrich, Robert Küffner, Klaus Voss
Executable Petri net models for the analysis of metabolic pathways. Int. J. Softw. Tools Technol. Transf. 3 (4) (2001)
Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer
Analysis of Gene Expression Data with Pathway Scores. ISMB (2000)
Robert Küffner, Ralf Zimmer, Thomas Lengauer
Pathway analysis in metabolic databases via differential metabolic display (DMD). Bioinform. 16 (9) (2000)
Robert Küffner, Ralf Zimmer, Thomas Lengauer
Pathway analysis in metabolic databases via differetial metabolic display (DMD). German Conference on Bioinformatics (1999)