Emily R. Miraldi

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 4

Top Topics

Visual Exploration

Regulatory Networks

Gene Expression

Top Venues

PLoS Comput. Biol.

IEEE Trans. Vis. Comput. Graph.

Publications

Tareian A. Cazares, Faiz W. Rizvi, Balaji Iyer, Xiaoting Chen, Michael Kotliar, Anthony T. Bejjani, Joseph A. Wayman, Omer Donmez, Benjamin Wronowski, Sreeja Parameswaran, Leah C. Kottyan, Artem Barski, Matthew T. Weirauch, V. B. Surya Prasath, Emily R. Miraldi
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PLoS Comput. Biol. 19 (1) (2023)
Dayanne M. Castro, Nicholas R. de Veaux, Emily R. Miraldi, Richard Bonneau
Multi-study inference of regulatory networks for more accurate models of gene regulation. PLoS Comput. Biol. 15 (1) (2019)
Ramya Raviram, Pedro P. Rocha, Christian L. Müller, Emily R. Miraldi, Sana Badri, Yi Fu, Emily Swanzey, Charlotte Proudhon, Valentina Snetkova, Richard Bonneau, Jane A. Skok
4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments. PLoS Comput. Biol. 12 (3) (2016)
Zachary D. Kurtz, Christian L. Müller, Emily R. Miraldi, Dan R. Littman, Martin J. Blaser, Richard A. Bonneau
Sparse and Compositionally Robust Inference of Microbial Ecological Networks. PLoS Comput. Biol. 11 (5) (2015)
Bowen Yu, Harish Doraiswamy, Xi Chen, Emily R. Miraldi, Mario Luis Arrieta-Ortiz, Christoph Hafemeister, Aviv Madar, Richard Bonneau, Cláudio T. Silva
Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks. IEEE Trans. Vis. Comput. Graph. 20 (12) (2014)