Pak Chung Sham

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 15

Top Topics

Complex Diseases

High Throughput Technologies

Gene Expression

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Hang Xu, Xianfu Yi, Xutong Fan, Chengyue Wu, Wei Wang, Xinlei Chu, Shijie Zhang, Xiaobao Dong, Zhao Wang, Jianhua Wang, Yao Zhou, Ke Zhao, Hongcheng Yao, Nan Zheng, Junwen Wang, Yupeng Chen, Dariusz Plewczynski, Pak Chung Sham, Kexin Chen, Dandan Huang, Mulin Jun Li
Inferring CTCF-binding patterns and anchored loops across human tissues and cell types. Patterns 4 (8) (2023)
Dandan Huang, Yao Zhou, Xianfu Yi, Xutong Fan, Jianhua Wang, Hongcheng Yao, Pak Chung Sham, Jihui Hao, Kexin Chen, Mulin Jun Li
VannoPortal: multiscale functional annotation of human genetic variants for interrogating molecular mechanism of traits and diseases. Nucleic Acids Res. 50 (D1) (2022)
Liangying Yin, Carlos Kwan-Long Chau, Yu-Ping Lin, Shitao Rao, Yong Xiang, Pak Chung Sham, Hon-Cheong So
A framework to decipher the genetic architecture of combinations of complex diseases: applications in cardiovascular medicine. Bioinform. 37 (22) (2021)
Dandan Huang, Zhao Wang, Yao Zhou, Qian Liang, Pak Chung Sham, Hongcheng Yao, Mulin Jun Li
vSampler: fast and annotation-based matched variant sampling tool. Bioinform. 37 (13) (2021)
Hongcheng Yao, Qian Liang, Xinyi Qian, Junwen Wang, Pak Chung Sham, Mulin Jun Li
Methods and resources to access mutation-dependent effects on cancer drug treatment. Briefings Bioinform. 21 (6) (2020)
Zhanye Zheng, Dandan Huang, Jianhua Wang, Ke Zhao, Yao Zhou, Zhenyang Guo, Sinan Zhai, Hang Xu, Hui Cui, Hongcheng Yao, Zhao Wang, Xianfu Yi, Shijie Zhang, Pak Chung Sham, Mulin Jun Li
QTLbase: an integrative resource for quantitative trait loci across multiple human molecular phenotypes. Nucleic Acids Res. 48 (Database-Issue) (2020)
Jianhua Wang, Dandan Huang, Yao Zhou, Hongcheng Yao, Huanhuan Liu, Sinan Zhai, Chengwei Wu, Zhanye Zheng, Ke Zhao, Zhao Wang, Xianfu Yi, Shijie Zhang, Xiaorong Liu, Zipeng Liu, Kexin Chen, Ying Yu, Pak Chung Sham, Mulin Jun Li
CAUSALdb: a database for disease/trait causal variants identified using summary statistics of genome-wide association studies. Nucleic Acids Res. 48 (Database-Issue) (2020)
Miao-Xin Li, Lin Jiang, Timothy Shin Heng Mak, Johnny S. H. Kwan, Chao Xue, Peikai Chen, Henry Chi-Ming Leung, Liqian Cui, Tao Li, Pak Chung Sham
A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia. Bioinform. 35 (4) (2019)
Shun H. Yip, Pak Chung Sham, Junwen Wang
Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data. Briefings Bioinform. 20 (4) (2019)
Dingge Ying, Mulin Jun Li, Pak Chung Sham, Miao-Xin Li
A powerful approach reveals numerous expression quantitative trait haplotypes in multiple tissues. Bioinform. 34 (18) (2018)
Dandan Huang, Xianfu Yi, Shijie Zhang, Zhanye Zheng, Panwen Wang, Chenghao Xuan, Pak Chung Sham, Junwen Wang, Mulin Jun Li
GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Mulin Jun Li, Hongcheng Yao, Dandan Huang, Huanhuan Liu, Zipeng Liu, Hang Xu, Yiming Qin, Jeanette Prinz, Weiyi Xia, Panwen Wang, Bin Yan, Nhan L. Tran, Jean-Pierre A. Kocher, Pak Chung Sham, Junwen Wang
mTCTScan: a comprehensive platform for annotation and prioritization of mutations affecting drug sensitivity in cancers. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Mulin Jun Li, Zipeng Liu, Panwen Wang, Maria P. Wong, Matthew R. Nelson, Jean-Pierre A. Kocher, Meredith Yeager, Pak Chung Sham, Stephen J. Chanock, Zhengyuan Xia, Junwen Wang
GWASdb v2: an update database for human genetic variants identified by genome-wide association studies. Nucleic Acids Res. 44 (Database-Issue) (2016)
Jacob Shujui Hsu, Johnny S. H. Kwan, Zhicheng Pan, Maria-Mercè Garcia-Barcelo, Pak Chung Sham, Miao-Xin Li
Inheritance-mode specific pathogenicity prioritization (ISPP) for human protein coding genes. Bioinform. 32 (20) (2016)
Mulin Jun Li, Zhicheng Pan, Zipeng Liu, Jiexing Wu, Panwen Wang, Yun Zhu, Feng Xu, Zhengyuan Xia, Pak Chung Sham, Jean-Pierre A. Kocher, Miao-Xin Li, Jun S. Liu, Junwen Wang
Predicting regulatory variants with composite statistic. Bioinform. 32 (18) (2016)
Mulin Jun Li, Bin Yan, Pak Chung Sham, Junwen Wang
Exploring the function of genetic variants in the non-coding genomic regions: approaches for identifying human regulatory variants affecting gene expression. Briefings Bioinform. 16 (3) (2015)
Sophie Van der Sluis, Conor V. Dolan, Jiang Li, You-Qiang Song, Pak Chung Sham, Danielle Posthuma, Miao-Xin Li
MGAS: a powerful tool for multivariate gene-based genome-wide association analysis. Bioinform. 31 (7) (2015)
Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Maria P. Wong, Pak Chung Sham, Junwen Wang
dbPSHP: a database of recent positive selection across human populations. Nucleic Acids Res. 42 (Database-Issue) (2014)
Mulin Jun Li, Lily Yan Wang, Zhengyuan Xia, Pak Chung Sham, Junwen Wang
GWAS3D: detecting human regulatory variants by integrative analysis of genome-wide associations, chromosome interactions and histone modifications. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Mulin Jun Li, Panwen Wang, Xiaorong Liu, Ee Lyn Lim, Zhangyong Wang, Meredith Yeager, Maria P. Wong, Pak Chung Sham, Stephen J. Chanock, Junwen Wang
GWASdb: a database for human genetic variants identified by genome-wide association studies. Nucleic Acids Res. 40 (Database-Issue) (2012)
Shu Yang, Hari Krishna Yalamanchili, Xinran Li, Kwok-Ming Yao, Pak Chung Sham, Michael Q. Zhang, Junwen Wang
Correlated evolution of transcription factors and their binding sites. Bioinform. 27 (21) (2011)
Yang Liu, Mark Junjie Li, Yiu-ming Cheung, Pak Chung Sham, Michael K. Ng
SKM-SNP: SNP markers detection method. J. Biomed. Informatics 43 (2) (2010)
Mulin Jun Li, Pak Chung Sham, Junwen Wang
-values from empirical distribution. Bioinform. 26 (22) (2010)
Miao-Xin Li, Lin Jiang, Patrick Yu-Ping Kao, Pak Chung Sham, You-Qiang Song
IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis. Bioinform. 25 (11) (2009)
Haiyong Liao, Michael K. Ng, Eric S. Fung, Pak Chung Sham
Unidimensional nonnegative scaling for genome-wide Linkage Disequilibrium maps. Int. J. Bioinform. Res. Appl. 4 (4) (2008)
Sio Iong Ao, Michael K. Ng, Pak Chung Sham
Constrained unidimensional scaling with application to genomics. Comput. Stat. Data Anal. 52 (1) (2007)
Pak Chung Sham, Sio Iong Ao, Johnny S. H. Kwan, P. Kao, F. Cheung, Pui-Yee Fong, Michael K. Ng
Combining functional and linkage disequilibrium information in the selection of tag SNPs. Bioinform. 23 (1) (2007)
Shaun Purcell, Mark J. Daly, Pak Chung Sham
WHAP: haplotype-based association analysis. Bioinform. 23 (2) (2007)
M.-X. Li, Lin Jiang, S.-L. Ho, You-Qiang Song, Pak Chung Sham
IGG: A tool to integrate GeneChips for genetic studies. Bioinform. 23 (22) (2007)
Michael K. Ng, Mark Junjie Li, Sio Iong Ao, Pak Chung Sham, Yiu-ming Cheung, Joshua Zhexue Huang
Clustering of SNP Data with Application to Genomics. ICDM Workshops (2006)
Sio Iong Ao, Kevin Y. Yip, Michael K. Ng, David Wai-Lok Cheung, Pui-Yee Fong, Ian Melhado, Pak Chung Sham
CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. Bioinform. 21 (8) (2005)
Jing Hua Zhao, Pak Chung Sham
Generic number systems and haplotype analysis. Comput. Methods Programs Biomed. 70 (1) (2003)
Shaun Purcell, Stacey S. Cherny, Pak Chung Sham
Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits. Bioinform. 19 (1) (2003)
F. V. Rijsdijk, Pak Chung Sham
Analytic approaches to twin data using structural equation models. Briefings Bioinform. 3 (2) (2002)
Jing Hua Zhao, Sebastien Lissarrague, Laurent Essioux, Pak Chung Sham
GENECOUNTING: haplotype analysis with missing genotypes. Bioinform. 18 (12) (2002)