Andrew K. Smith

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 4

Top Topics

Parameter Estimation

Hypothesis Formation

Automatic Segmentation

Knowledge Communities

Top Venues

PLoS Comput. Biol.

SpringSim (ADS)

Publications

Alireza Bagheri Rajeoni, Breanna Pederson, Ali Firooz, Hamed Abdollahi, Andrew K. Smith, Daniel G. Clair, Susan M. Lessner, Homayoun Valafar
TransONet: Automatic Segmentation of Vasculature in Computed Tomographic Angiograms Using Deep Learning. CoRR (2023)
Andrew K. Smith, Glen E. P. Ropella, Mitchell R. McGill, Preethi Krishnan, Lopamudra Dutta, Ryan C. Kennedy, Hartmut Jaeschke, C. Anthony Hunt
Contrasting model mechanisms of alanine aminotransferase (ALT) release from damaged and necrotic hepatocytes as an example of general biomarker mechanisms. PLoS Comput. Biol. 16 (6) (2020)
Andrew K. Smith, Glen E. P. Ropella, C. Anthony Hunt, Neil Kaplowitz, Murad Ookhtens
Virtual experiments help explain intra- and inter-strain variability of AILI-induced hepatic necrosis in mice. SpringSim (ADS) (2016)
Andrew K. Smith, Brenden K. Petersen, Glen E. P. Ropella, Ryan C. Kennedy, Neil Kaplowitz, Murad Ookhtens, C. Anthony Hunt
Competing Mechanistic Hypotheses of Acetaminophen-Induced Hepatotoxicity Challenged by Virtual Experiments. PLoS Comput. Biol. 12 (12) (2016)
Andrew K. Smith, Glen E. P. Ropella, Neil Kaplowitz, Murad Ookhtens, C. Anthony Hunt
Mechanistic agent-based damage and repair models as hypotheses for patterns of necrosis caused by drug induced liver injury. SummerSim (2014)
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. 8 (S-3) (2007)
Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinform. 23 (22) (2007)
Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein
YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) (2005)
Dov Greenbaum, Andrew K. Smith, Mark Gerstein
Editorial. Nucleic Acids Res. 33 (Database-Issue) (2005)
Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein
A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS (2004)