Weichuan Yu

ORCID

Publication Activity (10 Years)

Years Active: 1998-2024
Publications (10 Years): 16

Top Venues

University of Kiel, Germany (PHD)

Education History

University of Kiel, Germany

PHD

Publications

Xuechen Zhang, Isaac Cheng, Yingzhao Jin, Jiandong Shi, Chenrui Li, Jing-Hao Xue, Lai-Shan Tam, Weichuan Yu
DCES-PA: Deformation-controllable elastic shape model for 3D bone proliferation analysis using hand HR-pQCT images. Comput. Biol. Medicine 175 (2024)
Chen Zhou, Shuaijian Dai, Shengzhi Lai, Yuanqiao Lin, Xuechen Zhang, Ning Li, Weichuan Yu
ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis. BMC Bioinform. 24 (1) (2023)
Shengzhi Lai, Ning Li, Weichuan Yu
Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics. BIBM (2023)
Xuechen Zhang, Isaac Cheng, Shaojun Liu, Chenrui Li, Jing-Hao Xue, Lai-Shan Tam, Weichuan Yu
Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images. Comput. Medical Imaging Graph. 106 (2023)
Jiaan Dai, Fengchao Yu, Chen Zhou, Weichuan Yu
Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Yuli Gao, Guohui Chuai, Weichuan Yu, Shen Qu, Qi Liu
Data imbalance in CRISPR off-target prediction. Briefings Bioinform. 21 (4) (2020)
Jiaan Dai, Wei Jiang, Fengchao Yu, Weichuan Yu
Xolik: finding cross-linked peptides with maximum paired scores in linear time. Bioinform. 35 (2) (2019)
Danny Kit-Sang Yip, Landon L. Chan, Iris K. Pang, Wei Jiang, Nelson L. S. Tang, Weichuan Yu, Kevin Y. Yip
A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility. Bioinform. 34 (10) (2018)
Wei Jiang, Weichuan Yu
Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies. Bioinform. 33 (4) (2017)
Wei Jiang, Jing-Hao Xue, Weichuan Yu
What is the probability of replicating a statistically significant association in genome-wide association studies? Briefings Bioinform. 18 (6) (2017)
Fengchao Yu, Ning Li, Weichuan Yu
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database. BMC Bioinform. 17 (2016)
Wei Jiang, Weichuan Yu
Power estimation and sample size determination for replication studies of genome-wide association studies. BMC Genom. 17 (S-1) (2016)
Meng Wang, Wei Jiang, Ronald Ching Wan Ma, Weichuan Yu
GBOOST 2.0: A GPU-based tool for detecting gene-gene interactions with covariates adjustment in genome-wide association studies. BIBM (2016)
Chen Zhang, Tianzhu Liang, Philip K. T. Mok, Weichuan Yu
FPGA implementation of the coupled filtering method. BIBM (2016)
Tianzhu Liang, Ling Sing Yung, Weichuan Yu
Erratum to "On Feature Motion Decorrelation in Ultrasound Speckle Tracking". IEEE Trans. Medical Imaging 35 (2) (2016)
Guangyuan Yang, Wei Jiang, Qiang Yang, Weichuan Yu
PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies. Bioinform. 31 (9) (2015)
Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu
Low-Rank Modeling and Its Applications in Image Analysis. CoRR (2014)
Xiaowei Zhou, Can Yang, Hongyu Zhao, Weichuan Yu
Low-Rank Modeling and Its Applications in Image Analysis. ACM Comput. Surv. 47 (2) (2014)
Xiaowei Zhou, Jiming Liu, Xiang Wan, Weichuan Yu
Piecewise-constant and low-rank approximation for identification of recurrent copy number variations. Bioinform. 30 (14) (2014)
Chao Yang, Zengyou He, Weichuan Yu
A Combinatorial Perspective of the Protein Inference Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Xiaowei Zhou, Can Yang, Xiang Wan, Hongyu Zhao, Weichuan Yu
Multisample aCGH Data Analysis via Total Variation and Spectral Regularization. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (1) (2013)
Xiaowei Zhou, Xiaojie Huang, James S. Duncan, Weichuan Yu
Active Contours with Group Similarity. CVPR (2013)
Xiang Wan, Can Yang, Qiang Yang, Hongyu Zhao, Weichuan Yu
HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (1) (2013)
Tianzhu Liang, Ling Sing Yung, Weichuan Yu
On Feature Motion Decorrelation in Ultrasound Speckle Tracking. IEEE Trans. Medical Imaging 32 (2) (2013)
Xiaowei Zhou, Can Yang, Weichuan Yu
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation. IEEE Trans. Pattern Anal. Mach. Intell. 35 (3) (2013)
Chao Yang, Zengyou He, Can Yang, Weichuan Yu
Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (4) (2012)
Weichuan Yu, Zheng-Hua Tan, Yi Wan
Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering". Comput. Electr. Eng. 38 (1) (2012)
Xiang Wan, Can Yang, Weichuan Yu
Comments on 'An empirical comparison of several recent epistatic interaction detection methods'. Bioinform. 28 (1) (2012)
Ting Huang, Jingjing Wang, Weichuan Yu, Zengyou He
Protein inference: a review. Briefings Bioinform. 13 (5) (2012)
Xiaowei Zhou, Can Yang, Weichuan Yu
Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation. CVPR (2012)
Ling Sing Yung, Can Yang, Xiang Wan, Weichuan Yu
GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies. Bioinform. 27 (9) (2011)
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
A hidden two-locus disease association pattern in genome-wide association studies. BMC Bioinform. 12 (2011)
Chao Yang, Weichuan Yu
A brief review of signal processing issues in mass spectrometry-based proteomics studies. ACSCC (2011)
Zengyou He, Hongyu Zhao, Weichuan Yu
Score regularization for peptide identification. BMC Bioinform. 12 (S-1) (2011)
Can Yang, Xiaowei Zhou, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
Identifying disease-associated SNP clusters via contiguous outlier detection. Bioinform. 27 (18) (2011)
Zengyou He, Can Yang, Guangyu Guo, Ning Li, Weichuan Yu
Motif-All: discovering all phosphorylation motifs. BMC Bioinform. 12 (S-1) (2011)
Xiaowei Zhou, Can Yang, Weichuan Yu
Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation CoRR (2011)
Can Yang, Xiang Wan, Zengyou He, Qiang Yang, Hong Xue, Weichuan Yu
The choice of null distributions for detecting gene-gene interactions in genome-wide association studies. BMC Bioinform. 12 (S-1) (2011)
Zengyou He, Can Yang, Weichuan Yu
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Zengyou He, Weichuan Yu
Stable Feature Selection for Biomarker Discovery CoRR (2010)
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
Predictive rule inference for epistatic interaction detection in genome-wide association studies. Bioinform. 26 (1) (2010)
Ling Sing Yung, Chao Yang, Mohammed Dakna, Harald Mischak, Weichuan Yu
SyncPro : A synchronized visualization tool for differential analysis of proteomics data sets. BIBM Workshops (2010)
Zengyou He, Weichuan Yu
Stable feature selection for biomarker discovery. Comput. Biol. Chem. 34 (4) (2010)
Can Yang, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso. BMC Bioinform. 11 (S-1) (2010)
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
Detecting two-locus associations allowing for interactions in genome-wide association studies. Bioinform. 26 (20) (2010)
Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification. J. Comput. Biol. 17 (3) (2010)
Xiaowei Zhou, Tianzhu Liang, Weichuan Yu
Accurate segmentation of ultrasound images using the motion cue. ISBI (2010)
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Xiaodan Fan, Nelson L. S. Tang, Weichuan Yu
BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies CoRR (2010)
Tianzhu Liang, Weichuan Yu
A coupled filtering method to solve feature-motion decorrelation in speckle tracking. ISBI (2010)
Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu
MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study. BMC Bioinform. 10 (2009)
Qian Xu, Derek Hao Hu, Hong Xue, Weichuan Yu, Qiang Yang
Semi-supervised protein subcellular localization. BMC Bioinform. 10 (S-1) (2009)
Chao Yang, Zengyou He, Weichuan Yu
Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. BMC Bioinform. 10 (2009)
Zengyou He, Weichuan Yu
Improving peptide identification with single-stage mass spectrum peaks. Bioinform. 25 (22) (2009)
Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification. RECOMB (2009)
Can Yang, Zengyou He, Xiang Wan, Qiang Yang, Hong Xue, Weichuan Yu
SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies. Bioinform. 25 (4) (2009)
Junfeng Liu, Hongyu Zhao, Jun Tan, Dajie Luo, Weichuan Yu, E. James Harner, Weichung Joe Shih
Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal? J. Electr. Comput. Eng. 2008 (2008)
Zengyou He, Can Yang, Weichuan Yu
Peak bagging for peptide mass fingerprinting. Bioinform. 24 (10) (2008)
Weichuan Yu, Junfeng Liu, Chris Colangelo, Erol E. Gulcicek, Hongyu Zhao
A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. Comput. Biol. Chem. 31 (3) (2007)
Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan
Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking. Medical Image Anal. 10 (4) (2006)
Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Kenneth R. Williams, Hongyu Zhao
Detecting and aligning peaks in mass spectrometry data with applications to MALDI. Comput. Biol. Chem. 30 (1) (2006)
Weichuan Yu, Xiaoye Li, Junfeng Liu, Baolin Wu, Kenneth R. Williams, Hongyu Zhao
Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (3) (2006)
Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis, James S. Duncan
Using skew Gabor filter in source signal separation and local spectral orientation analysis. Image Vis. Comput. 23 (4) (2005)
Weichuan Yu, Xiaoye Li, Hongyu Zhao
Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. CSB Workshops (2005)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis. CVPR (1) (2004)
Weichuan Yu, Ping Yan, Albert J. Sinusas, Karl Thiele, James S. Duncan
Pointwise Motion Tracking in Echocardiographic Images. CVPR (1) (2004)
Weichuan Yu, James S. Duncan
The Choice of Tracking Feature In Ultrasound-Based Strain Imaging Analysis. ISBI (2004)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis. Image Vis. Comput. 21 (5) (2003)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
Multiple motion analysis: in spatial or in spectral domain? Comput. Vis. Image Underst. 90 (2) (2003)
Weichuan Yu, Ning Lin, Ping Yan, Kailasnath Purushothaman, Albert J. Sinusas, Karl Thiele, James S. Duncan
Motion Analysis of 3D Ultrasound Texture Patterns. FIMH (2003)
Ning Lin, Weichuan Yu, James S. Duncan
Combinative multi-scale level set framework for echocardiographic image segmentation. Medical Image Anal. 7 (4) (2003)
Ning Lin, Weichuan Yu, James S. Duncan
Combinative Multi-scale Level Set Framework for Echocardiographic Image Segmentation. MICCAI (1) (2002)
Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis
Oriented Structure of the Occlusion Distortion: Is It Reliable? IEEE Trans. Pattern Anal. Mach. Intell. 24 (9) (2002)
Weichuan Yu, Gerald Sommer, Kostas Daniilidis
3D-Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis. CVPR (1) (2001)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
Approximate orientation steerability based on angular Gaussians. IEEE Trans. Image Process. 10 (2) (2001)
Weichuan Yu, Gerald Sommer, Konstantinos Daniilidis
Skewness of Gabor Wavelets and Source Signal Separation. WAA (2001)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
A New 3D Orientation Steerable Filter. DAGM-Symposium (2000)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
Eliminating Outliers in Motion Occlusion Analysis. DAGM-Symposium (2000)
Weichuan Yu, Gerald Sommer, Steven S. Beauchemin, Konstantinos Daniilidis
Detection and Characterization of Multiple Motion Points. CVPR (1999)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
Low-Cost Junction Characterization using Polar Averaging Filters. ICIP (3) (1998)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
Rotated Wedge Averaging Method for Junction Classification. CVPR (1998)
Weichuan Yu, Konstantinos Daniilidis, Gerald Sommer
Junction Characterization Using Polar Pyramid. DAGM-Symposium (1998)

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Publication Activity (10 Years)

Top Topics

Top Venues

Weichuan Yu