Matthew Scotch

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 15

Top Topics

Avian Influenza

Health Informatics

Geographic Location

Top Venues

J. Am. Medical Informatics Assoc.

Publications

Andreas Züfle, Flora D. Salim, Taylor Anderson, Matthew Scotch, Li Xiong, Kacper Sokol, Hao Xue, Ruochen Kong, David J. Heslop, Hye-Young Paik, C. Raina MacIntyre
Leveraging Simulation Data to Understand Bias in Predictive Models of Infectious Disease Spread. ACM Trans. Spatial Algorithms Syst. 10 (2) (2024)
Saif S. Khairat, Sue S. Feldman, Arif Rana, Mohammad Faysel, Saptarshi Purkayastha, Matthew Scotch, Christina Eldredge
Foundational domains and competencies for baccalaureate health informatics education. J. Am. Medical Informatics Assoc. 30 (10) (2023)
Christina Eldredge, Saif Khairat, Sue S. Feldman, Matthew Scotch
Towards Standards for Undergraduate Health Informatics Education. AMIA (2022)
Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants. AMIA (2021)
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36 (20) (2020)
Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT (2019)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB (2019)
Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. Medication and Adverse Drug Event Detection (2018)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. 34 (13) (2018)
Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34 (9) (2018)
Arjun Magge, Matthew Scotch, Graciela Gonzalez
CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. SMM4H@AMIA (2017)
Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation 2017 (2017)
Daniel Magee, Marc A. Suchard, Matthew Scotch
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction. PLoS Comput. Biol. 13 (2) (2017)
Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. 23 (5) (2016)
Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez
Session Introduction. PSB (2016)
Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. 31 (12) (2015)
Daniel Magee, Rachel Beard, Matthew Scotch
Analyses of Merging Clinical and Viral Genetic Data for Influenza Surveillance. AMIA (2015)
Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL (2014)
Michael J. Kane, Natalie Price, Matthew Scotch, Peter Rabinowitz
Comparison of ARIMA and Random Forest time series models for prediction of avian influenza H5N1 outbreaks. BMC Bioinform. 15 (2014)
Susana B. Martins, Samson W. Tu, Richard Martinello, Michael Rubin, Philip Foulis, Stephen Luther, Tyler Forbush, Matthew Scotch, Brad Doebbelling, Mary K. Goldstein
Creating a MRSA Ontology to Support Categorization of MRSA Infections. AMIA (2013)
R. Braithwaite, Matthew Scotch
Using value of information to guide evaluation of decision supports for differential diagnosis: is it time for a new look? BMC Medical Informatics Decis. Mak. 13 (2013)
Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44 (Supplement-1) (2011)
Vijay Garla, Vincent Lo Re III, Zachariah Dorey-Stein, Farah Kidwai, Matthew Scotch, Julie A. Womack, Amy Justice, Cynthia Brandt
The Yale cTAKES extensions for document classification: architecture and application. J. Am. Medical Informatics Assoc. 18 (5) (2011)
Matthew Scotch, Mona Duggal, Cynthia Brandt, Zhenqui Lin, Richard N. Shiffman
Brief review: Use of statistical analysis in the biomedical informatics literature. J. Am. Medical Informatics Assoc. 17 (1) (2010)
Matthew Scotch, Bambang Parmanto, Valerie Monaco
Evaluation of SOVAT: An OLAP-GIS decision support system for community health assessment data analysis. BMC Medical Informatics Decis. Mak. 8 (2008)
Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15 (6) (2008)
Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41 (5) (2008)
Matthew Scotch, Bambang Parmanto
Development of SOVAT: A numerical-spatial decision support system for community health assessment research. Int. J. Medical Informatics 75 (10-11) (2006)
Matthew Scotch, Bambang Parmanto
SOVAT: Spatial OLAP Visualization and Analysis Tool. HICSS (2005)
Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak
The sublanguage of cross-coverage. AMIA (2002)
Matthew Scotch, George Hripcsak
The Companion Project - A Wearable Computing Device for the Patient for Reducing Medical Errors and Improving Patient Care. AMIA (2002)