Stephen B. Johnson

Publication Activity (10 Years)

Years Active: 1994-2022
Publications (10 Years): 14

Top Topics

Evaluation Methods

Electronic Health Records

Health Informatics

Clinical Practice Guidelines

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Thomas R. Campion Jr., Evan Sholle, Jyotishman Pathak, Stephen B. Johnson, John Leonard, Curtis L. Cole
An architecture for research computing in health to support clinical and translational investigators with electronic patient data. J. Am. Medical Informatics Assoc. 29 (4) (2022)
Suzanne Morrison Cox, Stephen B. Johnson, Eva Shiu, Sue Boren
The national landscape of culminating experiences in master's programs in health and biomedical informatics. J. Am. Medical Informatics Assoc. 28 (4) (2021)
Juan D. Irizarry-Cole, Stephen B. Johnson, Zane Dennis
The Impact of Model and Tokenization Method Selection on a Deep Learning Classifier on Medical Text. AMIA (2020)
Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer
Rethinking System Health Management. CoRR (2019)
Edward Balaban, Stephen B. Johnson, Mykel J. Kochenderfer
Unifying System Health Management and Automated Decision Making. J. Artif. Intell. Res. 65 (2019)
Stephen B. Johnson, Saif S. Khairat, Suzanne Austin Boren, Vishnu Mohan, Eva LaVerne Manos, William R. Hersh
Educational Communities in the Academic Forum: Sharing Knowledge and Promoting Standards. AMIA (2019)
Evan Sholle, Laura C. Pinheiro, Prakash Adekkanattu, Marcos Davila, Stephen B. Johnson, Jyotishman Pathak, Sanjai Sinha, Cassidie Li, Stasi A Lubansky, Monika M. Safford, Thomas R. Campion Jr.
Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation. J. Am. Medical Informatics Assoc. 26 (8-9) (2019)
Prakash Adekkanattu, Evan Sholle, Joseph J. DeFerio, Jyotishman Pathak, Stephen B. Johnson, Thomas R. Campion Jr.
Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes. AMIA (2018)
Annette L. Valenta, Eta S. Berner, Suzanne Austin Boren, Gloria J. Deckard, Christina Eldredge, Douglas B. Fridsma, Cynthia S. Gadd, Yang Gong, Todd R. Johnson, Josette Jones, E. LaVerne Manos, Kirk T. Phillips, Nancy K. Roderer, Douglas Rosendale, Anne M. Turner, Günter Tusch, Jeffrey J. Williamson, Stephen B. Johnson
AMIA Board White Paper: AMIA 2017 core competencies for applied health informatics education at the master's degree level. J. Am. Medical Informatics Assoc. 25 (12) (2018)
Lisette C. Roman, Jessica S. Ancker, Stephen B. Johnson, Yalini Senathirajah
Navigation in the electronic health record: A review of the safety and usability literature. J. Biomed. Informatics 67 (2017)
Evan Sholle, Joseph Kabariti, Stephen B. Johnson, John Leonard, Jyotishman Pathak, Vinay I. Varughese, Curtis L. Cole, Thomas R. Campion Jr.
Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers. AMIA (2017)
En-Ju D. Lin, Stephen B. Johnson, Chaitanya Shivade, Peter J. Embí, Albert M. Lai
Understanding the Role of Technology for Screening Participants in Clinical Studies. CRI (2017)
Jessica S. Ancker, Stephen B. Johnson
Designing an evaluation methods course in health informatics. AMIA (2016)
Stephen B. Johnson, Frank J. Farach, Kevin A. Pelphrey, Leon Rozenblit
Data management in clinical research: Synthesizing stakeholder perspectives. J. Biomed. Informatics 60 (2016)
Judith J. Warren, Stephen B. Johnson, Suzanne Austin Boren, Stuart M. Speedie, Günter Tusch
Health Informatics Graduate Program Accreditation: CAHIIM Process and Standards Update. AMIA (2015)
Michael E. Bales, Daniel C. Dine, Jacqueline A. Merrill, Stephen B. Johnson, Suzanne Bakken, Chunhua Weng
Associating co-authorship patterns with publications in high-impact journals. J. Biomed. Informatics 52 (2014)
Chunhua Weng, Philip R. O. Payne, Mark Velez, Stephen B. Johnson, Suzanne Bakken
Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines. Nursing Informatics (2014)
Chaitanya P. Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J. Embí, Noémie Elhadad, Stephen B. Johnson, Albert M. Lai
A review of approaches to identifying patient phenotype cohorts using electronic health records. J. Am. Medical Informatics Assoc. 21 (2) (2014)
Stephen B. Johnson, Thomas R. Campion Jr., Nonie E. Pegoraro, Leon Rozenblit, Charles Tirrell, Curt Cole
An Institutional Strategy to Support Clinical Research with Centrally Managed Custom Data Repositories. AMIA (2014)
Stephen B. Johnson, Michael E. Bales, Daniel Dine, Suzanne Bakken, Paul J. Albert, Chunhua Weng
Automatic generation of investigator bibliographies for institutional research networking systems. J. Biomed. Informatics 51 (2014)
Thomas R. Campion Jr., Alison Edwards, Stephen B. Johnson, Rainu Kaushal
Health information exchange system usage patterns in three communities: Practice sites, users, patients, and data. Int. J. Medical Informatics 82 (9) (2013)
Thomas R. Campion Jr., Lisa M. Kern, Alison Edwards, Renny Thomas, Stephen B. Johnson, Rainu Kaushal
Barriers to and Facilitators of Community-Based Health Information Technology Implementation. AMIA (2012)
David R. Kaufman, Patrick Cronin, Leon Rozenblit, David Voccola, Amanda Horton, Alisabeth Shine, Stephen B. Johnson
Facilitating the Iterative Design of Informatics Tools to Advance the Science of Autism. MIE (2011)
Chunhua Weng, Xiaoying Wu, Zhihui Luo, Mary Regina Boland, Dimitri Theodoratos, Stephen B. Johnson
EliXR: an approach to eligibility criteria extraction and representation. J. Am. Medical Informatics Assoc. 18 (Supplement) (2011)
Stephen B. Johnson, Glen Whitney, Matthew J. McAuliffe, Hailong Wang, Evan S. McCreedy, Leon Rozenblit, Clark C. Evans
Using global unique identifiers to link autism collections. J. Am. Medical Informatics Assoc. 17 (6) (2010)
Sookyung Hyun, Jason S. Shapiro, Genevieve B. Melton, Cara Schlegel, Peter D. Stetson, Stephen B. Johnson, Suzanne Bakken
Case Report: Iterative Evaluation of the Health Level 7 - Logical Observation Identifiers Names and Codes Clinical Document Ontology for Representing Clinical Document Names: A Case Report. J. Am. Medical Informatics Assoc. 16 (3) (2009)
Michael E. Bales, David R. Kaufman, Stephen B. Johnson
Evaluation of a Prototype Search and Visualization System for Exploring Scientific Communities. AMIA (2009)
Herbert S. Chase, David R. Kaufman, Stephen B. Johnson, Eneida A. Mendonça
Research Paper: Voice Capture of Medical Residents' Clinical Information Needs During an Inpatient Rotation. J. Am. Medical Informatics Assoc. 16 (3) (2009)
Sookyung Hyun, Stephen B. Johnson, Peter D. Stetson, Suzanne Bakken
Development and evaluation of nursing user interface screens using multiple methods. J. Biomed. Informatics 42 (6) (2009)
Peter W. Hung, Stephen B. Johnson, David R. Kaufman, Eneida A. Mendonça
A multi-level model of information seeking in the clinical domain. J. Biomed. Informatics 41 (2) (2008)
Sharib A. Khan, Rita Kukafka, J. Thomas Bigger, Stephen B. Johnson
Re-engineering Opportunities in Clinical Research using Workflow Analysis in Community Practice Settings. AMIA (2008)
Peter D. Stetson, Frances P. Morrison, Suzanne Bakken, Stephen B. Johnson
Research Paper: Preliminary Development of the Physician Documentation Quality Instrument. J. Am. Medical Informatics Assoc. 15 (4) (2008)
Stephen B. Johnson, Suzanne Bakken, Daniel Dine, Sookyung Hyun, Eneida A. Mendonça, Frances P. Morrison, Tiffani J. Bright, Tielman Van Vleck, Jesse O. Wrenn, Peter D. Stetson
Model Formulation: An Electronic Health Record Based on Structured Narrative. J. Am. Medical Informatics Assoc. 15 (1) (2008)
Tielman Van Vleck, Adam B. Wilcox, Peter D. Stetson, Stephen B. Johnson, Noémie Elhadad
Content and Structure of Clinical Problem Lists: A Corpus Analysis. AMIA (2008)
Daniel M. Stein, Jesse O. Wrenn, Stephen B. Johnson, Peter D. Stetson
Signout: A Collaborative Document with Implications for the Future of Clinical Information Systems. AMIA (2007)
Sharib A. Khan, Rita Kukafka, Philip R. O. Payne, J. Thomas Bigger, Stephen B. Johnson
A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings. MedInfo (2007)
Michael E. Bales, Yves A. Lussier, Stephen B. Johnson
Research Paper: Topological Analysis of Large-scale Biomedical Terminology Structures. J. Am. Medical Informatics Assoc. 14 (6) (2007)
Philip R. O. Payne, Eneida A. Mendonça, Stephen B. Johnson, Justin Starren
Conceptual knowledge acquisition in biomedicine: A methodological review. J. Biomed. Informatics 40 (5) (2007)
Jesse O. Wrenn, Peter D. Stetson, Stephen B. Johnson
An Unsupervised Machine Learning Approach to Segmentation of Clinician-Entered Free Text. AMIA (2007)
Tielman Van Vleck, Daniel M. Stein, Peter D. Stetson, Stephen B. Johnson
Assessing Data Relevance For Automated Generation Of A Clinical Summary. AMIA (2007)
Stephen B. Johnson, Richard A. Friedman
Bridging the gap between biological and clinical informatics in a graduate training program. J. Biomed. Informatics 40 (1) (2007)
Tiffani J. Bright, Suzanne Bakken, Stephen B. Johnson
Heuristic Evaluation of eNote: an Electronic Notes System. AMIA (2006)
Sharib A. Khan, Philip R. O. Payne, Stephen B. Johnson, J. Thomas Bigger, Rita Kukafka
Modeling Clinical Trials Workflow in Community Practice Settings. AMIA (2006)
Michael E. Bales, Stephen B. Johnson
Graph theoretic modeling of large-scale semantic networks. J. Biomed. Informatics 39 (4) (2006)
Janet P. Haas, Suzanne Bakken, Tiffani J. Bright, Genevieve B. Melton, Peter D. Stetson, Stephen B. Johnson
Clinicians' Perceptions of Usability of eNote. AMIA (2005)
Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson
ISO reference terminology models for nursing: Applicability for natural language processing of nursing narratives. Int. J. Medical Informatics 74 (7-8) (2005)
George Hripcsak, Li Zhou, Simon Parsons, Amar K. Das, Stephen B. Johnson
Model Formulation: Modeling Electronic Discharge Summaries as a Simple Temporal Constraint Satisfaction Problem. J. Am. Medical Informatics Assoc. 12 (1) (2005)
Jason S. Shapiro, Suzanne Bakken, Sookyung Hyun, Genevieve B. Melton, Cara Schlegel, Stephen B. Johnson
Document Ontology: Supporting Narrative Documents in Electronic Health Records. AMIA (2005)
Frances P. Morrison, Rita Kukafka, Stephen B. Johnson
Analyzing the Structure and Content of Public Health Messages. AMIA (2005)
Rita Kukafka, Frances P. Morrison, Stephen B. Johnson
Integrating Public Health and Computer Science Theoretical Perspectives for Developing Tailored Health Messages. AAAI Technical Report (4) (2004)
Suzanne Bakken, Sookyung Hyun, Carol Friedman, Stephen B. Johnson
A Comparison of Semantic Categories of the ISO Reference Terminology Models for Nursing and the MedLEE Natural Language Processing System. MedInfo (2004)
Yoon-Ho Seol, David R. Kaufman, Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
Scenario-based Assessment of Physicians' Information Needs. MedInfo (2004)
Stephen B. Johnson, David A. Campbell, Michael Krauthammer, P. Karina Tulipano, Eneida A. Mendonça, Carol Friedman, George Hripcsak
A Native XML Database Design for Clinical Document Research. AMIA (2003)
Stephen B. Johnson
A Framework for the Biomedical Informatics Curriculum. AMIA (2003)
Shamim Mollah, Stephen B. Johnson
Automatic Learning of the Morphology of Medical Language using Information Compression. AMIA (2003)
Rita Kukafka, Stephen B. Johnson, Allison Linfante, John P. Allegrante
Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use. J. Biomed. Informatics 36 (3) (2003)
Sookyung Hyun, Suzanne Bakken, Carol Friedman, Stephen B. Johnson
Natural Language Processing Challenges in HIV/AIDS Clinic Notes. AMIA (2003)
Peter D. Stetson, Stephen B. Johnson, Matthew Scotch, George Hripcsak
The sublanguage of cross-coverage. AMIA (2002)
Di Wang, David R. Kaufman, Eneida A. Mendonça, Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
The cognitive demands of an innovative query user interface. AMIA (2002)
Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
Knowledge Acquisition of Generic Queries for Information Retrieval. AMIA (2002)
Michael Krauthammer, Stephen B. Johnson, George Hripcsak, David A. Campbell, Carol Friedman
Representing nested semantic information in a linear string of text using XML. AMIA (2002)
Eneida A. Mendonça, Stephen B. Johnson, Yoon-Ho Seol, James J. Cimino
Analyzing the Semantics of patient data to rank records of literature retrieval. ACL Workshop on Natural Language Processing in the Biomedical Domain (2002)
Hongfang Liu, Stephen B. Johnson, Carol Friedman
Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine Learning and Conceptual Relations in the UMLS. J. Am. Medical Informatics Assoc. 9 (6) (2002)
Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
Using Patient Data to Rank Records of Literature Retrieval. AMIA (2002)
David A. Campbell, Stephen B. Johnson
A transformational-based learner for dependency grammars in discharge summaries. ACL Workshop on Natural Language Processing in the Biomedical Domain (2002)
Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson
Using narrative reports to support a digital library. AMIA (2001)
Robert H. Baud, Stephen B. Johnson, Christopher G. Chute, Olivier Bodenreider, Jeremy Rogers, Anita Burgun
Natural Language Processing, Medical Terminologies, and Ontological Issues for Patient Records and Biomedical Knowledge. MedInfo (2001)
Andrey Rzhetsky, Michael Krauthammer, Tomohiro Koike, Pauline Kra, Shawn M. Gomez, Hong Yu, Pablo Ariel Duboué, Wubin Weng, Stephen B. Johnson, Vasileios Hatzivassiloglou, Carol Friedman
GeneWays: A System for Mining Text and for Integrating Data on Molecular Pathways. German Conference on Bioinformatics (2001)
Carol Friedman, Hongfang Liu, Lyudmila Shagina, Stephen B. Johnson, George Hripcsak
Evaluating the UMLS as a source of lexical knowledge for medical language processing. AMIA (2001)
Yoon-Ho Seol, Stephen B. Johnson, James J. Cimino
Conceptual Guidance in Information Retrieval. AMIA (2001)
Eneida A. Mendonça, James J. Cimino, Stephen B. Johnson, Yoon-Ho Seol
Accessing Heterogeneous Sources of Evidence to Answer Clinical Questions. J. Biomed. Informatics 34 (2) (2001)
David A. Campbell, Stephen B. Johnson
Comparing syntactic complexity in medical and non-medical corpora. AMIA (2001)
Jinsong Cai, Stephen B. Johnson, George Hripcsak
Generic data modeling for home telemonitoring of chronically ill patients. AMIA (2000)
Michael Krauthammer, Nina Wacholder, Stephen B. Johnson, Gai Elhanan, Pat Molholt
Knowledge Sharing in the Construction of an Anatomical Navigational Ontology. AMIA (2000)
Justin Starren, Stephen B. Johnson
Review: An Object-oriented Taxonomy of Medical Data Presentations. J. Am. Medical Informatics Assoc. 7 (1) (2000)
Stephen B. Johnson, Damianos Chatziantoniou
Extended SQL for manipulating clinical warehouse data. AMIA (1999)
David A. Campbell, Stephen B. Johnson
A technique for semantic classification of unknown words using UMLS resources. AMIA (1999)
Fred M. Behlen, Stephen B. Johnson
White Paper: Multicenter Patient Records Research: Security Policies and Tools. J. Am. Medical Informatics Assoc. 6 (6) (1999)
Fred M. Behlen, Stephen B. Johnson
Security architecture for multi-site patient records research. AMIA (1999)
Stephen B. Johnson
Research Paper: A Semantic Lexicon for Medical Language Processing. J. Am. Medical Informatics Assoc. 6 (3) (1999)
Yoon-Ho Seol, Stephen B. Johnson, Justin B. Starren
Use of the Extensible Stylesheet Language (XSL) for medical data transformation. AMIA (1999)
Justin Starren, Stephen B. Johnson
New Dogs for Old Tricks: Finite State Modeling and XML for Access to Legacy Systems. AMIA (1999)
Stephen B. Johnson, T. Paul, A. Khenina
Generic database design for patient management information. AMIA (1997)
Stephen B. Johnson
Model Formulation: Generic Data Modeling for Clinical Rrepositories. J. Am. Medical Informatics Assoc. 3 (5) (1996)
Carol Friedman, George Hripcsak, William DuMouchel, Stephen B. Johnson, Paul D. Clayton
Natural language processing in an operational clinical information system. Nat. Lang. Eng. 1 (1) (1995)
William DuMouchel, Carol Friedman, George Hripcsak, Stephen B. Johnson, Paul D. Clayton
Two Applications of Statistical Modelling to Natural Language Processing. AISTATS (1995)
James J. Cimino, Paul D. Clayton, George Hripcsak, Stephen B. Johnson
Research Paper: Knowledge-based Approaches to the Maintenance of a Large Controlled Medical Terminology. J. Am. Medical Informatics Assoc. 1 (1) (1994)
Carol Friedman, Philip O. Alderson, John H. M. Austin, James J. Cimino, Stephen B. Johnson
Research Paper: A General Natural-language Text Processor for Clinical Radiology. J. Am. Medical Informatics Assoc. 1 (2) (1994)
Carol Friedman, James J. Cimino, Stephen B. Johnson
Research Paper: A Schema for Representing Medical Language Applied to Clinical Radiology. J. Am. Medical Informatics Assoc. 1 (3) (1994)