James Hadfield

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 6

Top Topics

Comparative Genomics

Severe Acute Respiratory Syndrome

Advances In Data Mining

Interactive Visualizations

Top Venues

Frontiers Bioinform.

J. Open Source Softw.

Publications

Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford, John Huddleston
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition. Frontiers Bioinform. 3 (2023)
Chrispin Chaguza, Gerry Tonkin-Hill, Stephanie W. Lo, James Hadfield, Nicholas J. Croucher, Simon R. Harris, Stephen D. Bentley
RCandy: an R package for visualizing homologous recombinations in bacterial genomes. Bioinform. 38 (5) (2022)
Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants. AMIA (2021)
John Huddleston, James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Elias Harkins, Trevor Bedford, Richard A. Neher, Emma B. Hodcroft
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. J. Open Source Softw. 6 (57) (2021)
James Hadfield, Nicholas J. Croucher, Richard J. Goater, Khalil AbuDahab, David M. Aanensen, Simon R. Harris
Phandango: an interactive viewer for bacterial population genomics. Bioinform. 34 (2) (2018)
James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher
Nextstrain: real-time tracking of pathogen evolution. Bioinform. 34 (23) (2018)