Richard A. Neher

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 7

Top Topics

Influenza Virus

Quality Control

Surface Inspection

Top Venues

PLoS Comput. Biol.

J. Open Source Softw.

Frontiers Bioinform.

Publications

Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher, Trevor Bedford, John Huddleston
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition. Frontiers Bioinform. 3 (2023)
Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher
TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. PLoS Comput. Biol. 18 (8) (2022)
Ivan Aksamentov, Cornelius Roemer, Emma B. Hodcroft, Richard A. Neher
Nextclade: clade assignment, mutation calling and quality control for viral genomes. J. Open Source Softw. 6 (67) (2021)
John Huddleston, James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Elias Harkins, Trevor Bedford, Richard A. Neher, Emma B. Hodcroft
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. J. Open Source Softw. 6 (57) (2021)
James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher
Nextstrain: real-time tracking of pathogen evolution. Bioinform. 34 (23) (2018)
Vadim Puller, Richard A. Neher, Jan Albert
Estimating time of HIV-1 infection from next-generation sequence diversity. PLoS Comput. Biol. 13 (10) (2017)
Richard A. Neher, Trevor Bedford
nextflu: real-time tracking of seasonal influenza virus evolution in humans. Bioinform. 31 (21) (2015)
Fabio Zanini, Richard A. Neher
FFPopSim: an efficient forward simulation package for the evolution of large populations. Bioinform. 28 (24) (2012)
Richard A. Neher, Thomas Leitner
Recombination Rate and Selection Strength in HIV Intra-patient Evolution. PLoS Comput. Biol. 6 (1) (2010)
Fabian J. Theis, Richard A. Neher, Andre Zeug
Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data. ICA (2009)