Graciela Gonzalez-Hernandez

Publication Activity (10 Years)

Years Active: 2011-2024
Publications (10 Years): 45

Top Topics

Automatically Extracting

Adverse Drug Reaction

Top Venues

J. Am. Medical Informatics Assoc.

J. Biomed. Informatics

Publications

Yao Ge, Sudeshna Das, Karen O'Connor, Mohammed Ali Al-Garadi, Graciela Gonzalez-Hernandez, Abeed Sarker
Reddit-Impacts: A Named Entity Recognition Dataset for Analyzing Clinical and Social Effects of Substance Use Derived from Social Media. CoRR (2024)
Ari Z. Klein, Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez
Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium. J. Am. Medical Informatics Assoc. 31 (4) (2024)
Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez
Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics 151 (2024)
Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore
ChatGPT and large language models in academia: opportunities and challenges. BioData Min. 16 (1) (2023)
Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023)
Davy Weissenbacher, Juan Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Lucia Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING (2022)
Graciela Gonzalez-Hernandez, Martin Krallinger, Monica Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation 2022 (2022) (2022)
Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT (2021)
Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez
Advanced Methods for Big Data Analytics in Women's Health. PSB (2021)
Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez
Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines. AIME (2021)
Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez
DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. J. Am. Medical Informatics Assoc. 28 (10) (2021)
Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez
Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. 28 (12) (2021)
Ari Z. Klein, Arjun Magge, Graciela Gonzalez-Hernandez
ReportAGE: Automatically extracting the exact age of Twitter users based on self-reports in tweets. CoRR (2021)
Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker
Text classification models for the automatic detection of nonmedical prescription medication use from social media. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36 (20) (2020)
Arjun Magge, Varad Pimpalkhute, Divya Rallapalli, David Siguenza, Graciela Gonzalez-Hernandez
UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on Twitter. W-NUT@EMNLP (2020)
Jason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen, Ryan J. Urbanowicz, John H. Holmes
Ideas for how informaticians can get involved with COVID-19 research. BioData Min. 13 (1) (2020)
Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING (2020)
Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Comment on: "Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts". J. Am. Medical Informatics Assoc. 26 (6) (2019)
Ari Z. Klein, Abeselom Gebreyesus, Graciela Gonzalez-Hernandez
Automatically Identifying Comparator Groups on Twitter for Digital Epidemiology of Pregnancy Outcomes. CoRR (2019)
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR (2019)
Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT (2019)
Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL (2019)
Anahita Davoudi, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez-Hernandez
Towards Automatic Bot Detection in Twitter for Health-related Tasks. CoRR (2019)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB (2019)
Abeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone
Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods. MedInfo (2019)
Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez
An interpretable natural language processing system for written medical examination assessment. J. Biomed. Informatics 98 (2019)
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Towards scaling Twitter for digital epidemiology of birth defects. npj Digit. Medicine 2 (2019)
Mary Regina Boland, Snigdha Alur-Gupta, Lisa Levine, Peter Gabriel, Graciela Gonzalez-Hernandez
Disease associations depend on visit type: results from a visit-wide association study. BioData Min. 12 (1) (2019)
Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez
Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. 26 (12) (2019)
Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter. J. Biomed. Informatics 87 (2018)
Abeed Sarker, Graciela Gonzalez-Hernandez
An unsupervised and customizable misspelling generator for mining noisy health-related text sources. J. Biomed. Informatics 88 (2018)
Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez
Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018. SMM4H@EMNLP (2018)
Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez
Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP (2018)
Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez
Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research. CoRR (2018)
Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu
Session Introduction. PSB (2018)
Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. Medication and Adverse Drug Event Detection (2018)
Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez
Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. 34 (13) (2018)
Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34 (9) (2018)
Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez
Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task. J. Am. Medical Informatics Assoc. 25 (10) (2018)
Abeed Sarker, Graciela Gonzalez-Hernandez
An unsupervised and customizable misspelling generator for mining noisy health-related text sources. CoRR (2018)
Ehsan Emadzadeh, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Hybrid Semantic Analysis for Mapping Adverse Drug Reaction Mentions in Tweets to Medical Terminology. AMIA (2017)
Ioannis Korkontzelos, Azadeh Nikfarjam, Matthew Shardlow, Abeed Sarker, Sophia Ananiadou, Graciela Gonzalez-Hernandez
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts. J. Biomed. Informatics 62 (2016)
Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Social Media Mining Shared Task Workshop. PSB (2016)
Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez
Session Introduction. PSB (2016)
Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez
Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. J. Am. Medical Informatics Assoc. 22 (3) (2015)
Abeed Sarker, Rachel E. Ginn, Azadeh Nikfarjam, Karen O'Connor, Karen L. Smith, Swetha Jayaraman, Tejaswi Upadhaya, Graciela Gonzalez-Hernandez
Utilizing social media data for pharmacovigilance: A review. J. Biomed. Informatics 54 (2015)
Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez
DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter. SemEval@NAACL-HLT (2015)
Ehsan Emadzadeh, Azadeh Nikfarjam, Rachel E. Ginn, Graciela Gonzalez-Hernandez
Unsupervised gene function extraction using semantic vectors. Database J. Biol. Databases Curation 2014 (2014)
Karen O'Connor, Azadeh Nikfarjam, Rachel E. Ginn, Pranoti Pimpalkhute, Abeed Sarker, Karen L. Smith, Graciela Gonzalez-Hernandez
Pharmacovigilance on Twitter? Mining Tweets for Adverse Drug Reactions. AMIA (2014)
Azadeh Nikfarjam, Ehsan Emadzadeh, Graciela Gonzalez-Hernandez
Towards generating a patient's timeline: Extracting temporal relationships from clinical notes. J. Biomed. Informatics 46 (6) (2013)
Ehsan Emadzadeh, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez
Double Layered Learning for Biological Event Extraction from Text. BioNLP@ACL (Shared Task) (2011)