Bo Liu

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 32

Top Topics

Protein Function

Data Clustering

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information. Bioinform. 39 (10) (2023)
Kaitao Wu, Lexiang Wang, Bo Liu, Yang Liu, Yadong Wang, Junyi Li
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Linlin Du, Rui Han, Bo Liu, Yadong Wang, Junyi Li
ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing
Erratum to: abPOA: an SIMD-based C library for fast partial order alignment using adaptive band. Bioinform. 37 (19) (2021)
Yadong Liu, Tao Jiang, Junhao Su, Bo Liu, Tianyi Zang, Yadong Wang
SKSV: ultrafast structural variation detection from circular consensus sequencing reads. Bioinform. 37 (20) (2021)
Wei Quan, Bo Liu, Yadong Wang
Fast and SNP-aware short read alignment with SALT. BMC Bioinform. (9) (2021)
Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang, Bo Liu
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Ming He, Chen Huang, Bo Liu, Yadong Wang, Junyi Li
Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction. BMC Bioinform. 22 (1) (2021)
Junyi Li, Wei Jiang, Henry Han, Jing Liu, Bo Liu, Yadong Wang
ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering. Comput. Biol. Chem. 90 (2021)
Naile Shi, Yulin Wu, Linlin Du, Bo Liu, Yadong Wang, Junyi Li
ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding. ICIC (3) (2021)
Junyi Li, Huinian Li, Xiao Ye, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Qing Liao, Bo Liu, Yadong Wang
IIMLP: integrated information-entropy-based method for LncRNA prediction. BMC Bioinform. (3) (2021)
Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band. Bioinform. 37 (15) (2021)
Junyi Li, Lixin Wang, Xiaoshuai Zhang, Bo Liu, Yadong Wang
GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks. BIBM (2020)
Junyi Li, Yuan Ping, Hong Li, Huinian Li, Ying Liu, Bo Liu, Yadong Wang
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network. Comput. Biol. Chem. 88 (2020)
Zhe Cui, Bo Liu, Liran Juan, Tianyi Zang, Tao Jiang, Yadong Wang
Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq. BIBM (2020)
Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang
Fast read alignment with incorporation of known genomic variants. BMC Medical Informatics Decis. Mak. (6) (2019)
Wei Quan, Guangri Quan, Bo Liu, Yadong Wang
A Bidirectional Fuzzy Index and Approximate Search Algorithm for Next Generation Sequencing. BIBM (2019)
Tao Jiang, Bo Liu, Junyi Li, Yadong Wang
rMETL: sensitive mobile element insertion detection with long read realignment. Bioinform. 35 (18) (2019)
Junyi Li, Huinian Li, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Bo Liu, Yadong Wang
Prediction of Human LncRNAs Based on Integrated Information Entropy Features. ICIC (2) (2019)
Yan Gao, Bo Liu, Yadong Wang, Yi Xing
TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain. Bioinform. 35 (14) (2019)
Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu, Yadong Wang
Integrated entropy-based approach for analyzing exons and introns in DNA sequences. BMC Bioinform. (8) (2019)
Wei Quan, Bo Liu, Yadong Wang
SALT: a fast, memory-efficient and SNP-aware short read alignment tool. BIBM (2019)
Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang
Fast variation-aware read alignment with deBGA-VARA. BIBM (2018)
Yilei Fu, Tao Jiang, Bo Liu, Yadong Wang
rCANID: read Clustering and Assembly-based Novel Insertion Detection tool. BIBM (2018)
Dengfeng Guan, Bo Liu, Yadong Wang
deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexing. BIBM (2018)
Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering. Bioinform. 33 (17) (2017)
Bo Liu, Yan Gao, Yadong Wang
LAMSA: fast split read alignment with long approximate matches. Bioinform. 33 (2) (2017)
Haobin Yao, Tak Wah Lam, H. F. Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
Accurate annotation of metagenomic data without species-level references. Int. J. Data Min. Bioinform. 19 (4) (2017)
Bo Liu, Hongzhe Guo, Michael Brudno, Yadong Wang
deBGA: read alignment with de Bruijn graph-based seed and extension. Bioinform. 32 (21) (2016)
Bo Liu, Dixian Zhu, Yadong Wang
deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encoding. Bioinform. 32 (12) (2016)
Bo Liu, Dengfeng Guan, Mingxiang Teng, Yadong Wang
rHAT: fast alignment of noisy long reads with regional hashing. Bioinform. 32 (11) (2016)
Haobin Yao, Tak Wah Lam, Hing-Fung Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu
Accurate annotation of metagenomic data without species-level references. BIBM (2016)
Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads. BMC Bioinform. 16 (2015)
Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach. BCB (2013)
Peigang Xu, Yadong Wang, Bo Liu
A differentor-based adaptive ontology-matching approach. J. Inf. Sci. 38 (5) (2012)