Optimizing data intensive GPGPU computations for DNA sequence alignment.
Cole TrapnellMichael C. SchatzPublished in: Parallel Comput. (2009)
Keyphrases
- data intensive
- sequence alignment
- binding sites
- sequence databases
- data management
- comparative genomics
- phylogenetic analysis
- data access
- web services
- pairwise
- big data
- dna sequences
- dynamic programming
- protein sequences
- smith waterman
- biological sequences
- amino acids
- gene expression
- grid computing
- sequence analysis
- sequence data
- statistical significance
- multiple alignment
- distributed computing
- microarray
- cloud computing
- sensor networks
- knowledge discovery
- query processing
- databases