MEM-Based Pangenome Indexing for k-mer Queries.
Stephen HwangNathaniel K. BrownOmar AhmedKatharine M. JenikeSam KovakaMichael C. SchatzBen LangmeadPublished in: WABI (2024)
Keyphrases
- database
- indexing methods
- query language
- indexing techniques
- query processing
- efficient query processing
- access methods
- inverted index
- query evaluation
- efficient processing
- data retrieval
- indexing schemes
- indexing structure
- range queries
- nearest neighbor queries
- response time
- inverted file
- indexing method
- complex queries
- pre computed
- query formulation
- user queries
- web search engines
- backend database
- retrieval process
- database queries
- data objects
- data sources
- indexing scheme
- search queries
- retrieval strategies
- similarity queries
- answering queries
- text retrieval
- data structure
- information retrieval