Liliana Florea

Publication Activity (10 Years)

Years Active: 2003-2021
Publications (10 Years): 4

Top Topics

Alternative Splicing

Event Sequences

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Guangyu Yang, Leslie Cope, Zitong He, Liliana Florea
Jutils: a visualization toolkit for differential alternative splicing events. Bioinform. 37 (22) (2021)
Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer. Bioinform. 34 (11) (2018)
Guangyu Yang, Liliana Florea
JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples. ICCABS (2016)
Guangyu Yang, Liliana Florea
JULiP: An efficient model for accurate intron selection from multiple RNA-seq samples. ICCABS (2016)
Liliana Florea, Li Song, Steven L. Salzberg
Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues. F1000Research 2 (2013)
Li Song, Liliana Florea
CLASS: constrained transcript assembly of RNA-seq reads. BMC Bioinform. 14 (S-5) (2013)
Liliana Florea, Steven L. Salzberg
Genome-Guided Transcriptome Assembly in the Age of Next-Generation Sequencing. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (5) (2013)
Brian Walenz, Liliana Florea
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing. Bioinform. 27 (13) (2011)
Liliana Florea, Ingrid Mihai, Leming Zhou
Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment. Commun. Inf. Syst. 10 (2) (2010)
Leming Zhou, Ingrid Mihai, Liliana Florea
Effective cluster-based seed design for cross-species sequence comparisons. Bioinform. 24 (24) (2008)
Leming Zhou, Jonathan Stanton, Liliana Florea
Universal seeds for cDNA-to-genome comparison. BMC Bioinform. 9 (2008)
Leming Zhou, Liliana Florea
Designing Sensitive and Specific Spaced Seeds for Cross-Species mRNA-to-Genome Alignment. J. Comput. Biol. 14 (2) (2007)
Liliana Florea
Bioinformatics of alternative splicing and its regulation. Briefings Bioinform. 7 (1) (2006)
Ross A. Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
Finding Anchors for Genomic Sequence Comparison. J. Comput. Biol. 12 (6) (2005)
Ross Lippert, Xiaoyue Zhao, Liliana Florea, Clark M. Mobarry, Sorin Istrail
Finding anchors for genomic sequence comparison. RECOMB (2004)
Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller
EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae. Nucleic Acids Res. 31 (13) (2003)
Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail
Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB (2003)