Bjarni V. Halldórsson

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 13

Top Topics

Gene Conversion

Clinical Decision Support

Top Venues

Comput. Math. Methods Medicine

BMC Medical Informatics Decis. Mak.

Oper. Res. Lett.

Publications

Marteinn T. Hardarson, Gunnar Palsson, Bjarni V. Halldórsson
NCOurd: modelling length distributions of NCO events and gene conversion tracts. Bioinform. 39 (8) (2023)
Thomas Krannich, W. Timothy J. White, Sebastian Niehus, Guillaume Holley, Bjarni V. Halldórsson, Birte Kehr
Population-scale detection of non-reference sequence variants using colored de Bruijn graphs. Bioinform. 38 (3) (2022)
Hannes P. Eggertsson, Bjarni V. Halldórsson
read_haps: using read haplotypes to detect same species contamination in DNA sequences. Bioinform. 37 (15) (2021)
Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie
Local improvement algorithms for a path packing problem: A performance analysis based on linear programming. Oper. Res. Lett. 49 (1) (2021)
Snædís Kristmundsdóttir, Hannes P. Eggertsson, Gudny A. Arnadottir, Bjarni V. Halldórsson
popSTR2 enables clinical and population-scale genotyping of microsatellites. Bioinform. 36 (7) (2020)
Luciano Porretta, Daniele Catanzaro, Bjarni V. Halldórsson, Bernard Fortz
A Branch & Price algorithm for the minimum cost clique cover problem in max-point tolerance graphs. 4OR 17 (1) (2019)
Haukur Tyr Gudmundsson, Karen E. Hansen, Bjarni V. Halldórsson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
Clinical decision support system for the management of osteoporosis compared to NOGG guidelines and an osteology specialist: a validation pilot study. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
Corrigendum to "A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis". Comput. Math. Methods Medicine 2017 (2017)
Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho
Max point-tolerance graphs. Discret. Appl. Math. 216 (2017)
Snædís Kristmundsdóttir, Brynja D. Sigurpálsdóttir, Birte Kehr, Bjarni V. Halldórsson
popSTR: population-scale detection of STR variants. Bioinform. 33 (24) (2017)
Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou
The minimum vulnerability problem on specific graph classes. J. Comb. Optim. 32 (4) (2016)
Birte Kehr, Páll Melsted, Bjarni V. Halldórsson
PopIns: population-scale detection of novel sequence insertions. Bioinform. 32 (7) (2016)
Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy
Streaming Algorithms for Independent Sets in Sparse Hypergraphs. Algorithmica 76 (2) (2016)
Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson
A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis. Comput. Math. Methods Medicine 2015 (2015)
Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho
Max Point-Tolerance Graphs. CoRR (2015)
Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou
The Minimum Vulnerability Problem on Graphs. COCOA (2014)
Páll Melsted, Bjarni V. Halldórsson
-mer abundance estimation. Bioinform. 30 (24) (2014)
Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
Estimating population size via line graph reconstruction. Algorithms Mol. Biol. 8 (2013)
Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
An Integer Programming Formulation of the Parsimonious Loss of Heterozygosity Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem. ISBRA (2012)
Jón Sveinbjörnsson, Bjarni V. Halldórsson
PAIR: polymorphic Alu insertion recognition. BMC Bioinform. 13 (S-6) (2012)
Bjarni V. Halldórsson, Dima Blokh, Roded Sharan
Estimating Population Size via Line Graph Reconstruction. WABI (2012)
Bjarni V. Halldórsson
Invited: Algorithmic challenges in DNA sequencing and disease association. ICCABS (2012)
Derek Aguiar, Bjarni V. Halldórsson, Eric M. Morrow, Sorin Istrail
DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinform. 28 (12) (2012)
Bjarni V. Halldórsson, Derek Aguiar, Sorin Istrail
Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. Pacific Symposium on Biocomputing (2011)
Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. J. Comput. Biol. 18 (3) (2011)
Bjarni V. Halldórsson, Daniel Gudbjartsson
An Algorithm for Detecting High Frequency Copy Number Polymorphisms Using SNP Arrays. J. Comput. Biol. 18 (8) (2011)
Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
Crucial abelian k-power-free words. Discret. Math. Theor. Comput. Sci. 12 (5) (2010)
Sergey V. Avgustinovich, Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
On shortest crucial words avoiding abelian powers. Discret. Appl. Math. 158 (6) (2010)
Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. RECOMB (2010)
Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy
Streaming Algorithms for Independent Sets. ICALP (1) (2010)
Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev
Crucial Words for Abelian Powers. Developments in Language Theory (2009)
Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
Islands of Tractability for Parsimony Haplotyping. IEEE ACM Trans. Comput. Biol. Bioinform. 3 (3) (2006)
Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. J. Comput. Biol. 13 (2) (2006)
Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail
Islands of Tractability for Parsimony Haplotyping. CSB (2005)
Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. RECOMB (2005)
Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
Combinatorial Problems Arising in SNP and Haplotype Analysis. DMTCS (2003)
Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail
Haplotypes and informative SNP selection algorithms: don't block out information. RECOMB (2003)
Russell Schwartz, Bjarni V. Halldórsson, Vineet Bafna, Andrew G. Clark, Sorin Istrail
Robustness of Inference of Haplotype Block Structure. J. Comput. Biol. 10 (1) (2003)
Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie
Approximation algorithms for the test cover problem. Math. Program. 98 (1-3) (2003)
Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail
Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB (2003)
Alan M. Frieze, Bjarni V. Halldórsson
Optimal Sequencing by Hybridization in Rounds. J. Comput. Biol. 9 (2) (2002)
Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference (2002)
Bjarni V. Halldórsson, Magnús M. Halldórsson, R. Ravi
On the Approximability of the Minimum Test Collection Problem. ESA (2001)
Alan M. Frieze, Bjarni V. Halldórsson
Optimal sequencing by hybridization in rounds. RECOMB (2001)