Chengfei Yan

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 9

Top Topics

Scoring Functions

Tandem Mass Spectra

Multiple Sequence Alignments

Top Venues

Briefings Bioinform.

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Yunda Si, Chengfei Yan
Improved inter-protein contact prediction using dimensional hybrid residual networks and protein language models. Briefings Bioinform. 24 (2) (2023)
Yunda Si, Chengfei Yan
Protein complex structure prediction powered by multiple sequence alignments of interologs from multiple taxonomic ranks and AlphaFold2. Briefings Bioinform. 23 (4) (2022)
Yunda Si, Yi Zhang, Chengfei Yan
A reproducibility analysis-based statistical framework for residue-residue evolutionary coupling detection. Briefings Bioinform. 23 (2) (2022)
Yunda Si, Chengfei Yan
Improved protein contact prediction using dimensional hybrid residual networks and singularity enhanced loss function. Briefings Bioinform. 22 (6) (2021)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
MDockPeP: An ab-initio protein-peptide docking server. J. Comput. Chem. 39 (28) (2018)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015. J. Comput. Aided Mol. Des. 31 (8) (2017)
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Bioinform. 33 (14) (2017)
Chengfei Yan, Sam Z. Grinter, Benjamin Ryan Merideth, Zhiwei Ma, Xiaoqin Zou
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks. J. Chem. Inf. Model. 56 (6) (2016)
Chengfei Yan, Xiaoqin Zou
Predicting peptide binding sites on protein surfaces by clustering chemical interactions. J. Comput. Chem. 36 (1) (2015)
Sam Z. Grinter, Chengfei Yan, Sheng-You Huang, Lin Jiang, Xiaoqin Zou
Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark. J. Chem. Inf. Model. 53 (8) (2013)