Xiaoqin Zou

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 11

Top Topics

Predicting Protein

Tandem Mass Spectra

Complex Structures

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

Commun. Inf. Syst.

Publications

Xianjin Xu, Xiaoqin Zou
Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment. J. Chem. Inf. Model. 62 (1) (2022)
Shuang Zhang, Kyle Yu Chen, Xiaoqin Zou
Carbohydrate-protein interactions: advances and challenges. Commun. Inf. Syst. 21 (1) (2021)
Liming Qiu, Xiaoqin Zou
Scoring functions for protein-RNA complex structure prediction: advances, applications, and future directions. Commun. Inf. Syst. 20 (1) (2020)
Xianjin Xu, Xiaoqin Zou
PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking. J. Comput. Chem. 41 (4) (2020)
Xianjin Xu, Zhiwei Ma, Rui Duan, Xiaoqin Zou
Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight. J. Comput. Aided Mol. Des. 33 (3) (2019)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
MDockPeP: An ab-initio protein-peptide docking server. J. Comput. Chem. 39 (28) (2018)
Rui Duan, Xianjin Xu, Xiaoqin Zou
Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor. J. Comput. Aided Mol. Des. 32 (1) (2018)
Xianjin Xu, Chengfei Yan, Xiaoqin Zou
Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015. J. Comput. Aided Mol. Des. 31 (8) (2017)
Xianjin Xu, Zhiwei Ma, Hongmin Sun, Xiaoqin Zou
SM-TF: A structural database of small molecule-transcription factor complexes. J. Comput. Chem. 37 (17) (2016)
Chengfei Yan, Sam Z. Grinter, Benjamin Ryan Merideth, Zhiwei Ma, Xiaoqin Zou
Iterative Knowledge-Based Scoring Functions Derived from Rigid and Flexible Decoy Structures: Evaluation with the 2013 and 2014 CSAR Benchmarks. J. Chem. Inf. Model. 56 (6) (2016)
Chengfei Yan, Xiaoqin Zou
Predicting peptide binding sites on protein surfaces by clustering chemical interactions. J. Comput. Chem. 36 (1) (2015)
Sam Z. Grinter, Xiaoqin Zou
A Bayesian statistical approach of improving knowledge-based scoring functions for protein-ligand interactions. J. Comput. Chem. 35 (12) (2014)
Sheng-You Huang, Xiaoqin Zou
A nonredundant structure dataset for benchmarking protein-RNA computational docking. J. Comput. Chem. 34 (4) (2013)
Sam Z. Grinter, Chengfei Yan, Sheng-You Huang, Lin Jiang, Xiaoqin Zou
Automated Large-Scale File Preparation, Docking, and Scoring: Evaluation of ITScore and STScore Using the 2012 Community Structure-Activity Resource Benchmark. J. Chem. Inf. Model. 53 (8) (2013)
Sheng-You Huang, Xiaoqin Zou
Construction and Test of Ligand Decoy Sets Using MDock: Community Structure-Activity Resource Benchmarks for Binding Mode Prediction. J. Chem. Inf. Model. 51 (9) (2011)
Sheng-You Huang, Xiaoqin Zou
Scoring and Lessons Learned with the CSAR Benchmark Using an Improved Iterative Knowledge-Based Scoring Function. J. Chem. Inf. Model. 51 (9) (2011)
Sheng-You Huang, Xiaoqin Zou
Inclusion of Solvation and Entropy in the Knowledge-Based Scoring Function for Protein-Ligand Interactions. J. Chem. Inf. Model. 50 (2) (2010)
Sheng-You Huang, Xiaoqin Zou
An iterative knowledge-based scoring function to predict protein-ligand interactions: II. Validation of the scoring function. J. Comput. Chem. 27 (15) (2006)
Sheng-You Huang, Xiaoqin Zou
An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials. J. Comput. Chem. 27 (15) (2006)