Galip Gürkan Yardimci

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 5

Top Topics

Protein Sequences

Top Venues

Proc. Natl. Acad. Sci. USA

PLoS Comput. Biol.

Publications

Hyeon-Jin Kim, Galip Gürkan Yardimci, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B. Ware, Jay Shendure, Zhi-jun Duan, William Stafford Noble
Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. PLoS Comput. Biol. 16 (9) (2020)
Oana Ursu, Nathan Boley, Maryna Taranova, Y. X. Rachel Wang, Galip Gürkan Yardimci, William Stafford Noble, Anshul Kundaje
GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs. Bioinform. 34 (16) (2018)
Jie Liu, Dejun Lin, Galip Gürkan Yardimci, William Stafford Noble
Unsupervised embedding of single-cell Hi-C data. Bioinform. 34 (13) (2018)
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Bioinform. 33 (14) (2017)
Galip Gürkan Yardimci, William Stafford Noble
Predictive model of 3D domain formation via CTCF-mediated extrusion. Proc. Natl. Acad. Sci. USA 112 (47) (2015)
Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman
Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem. ISCIS (2006)