William S. Noble

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 15

Top Topics

Tandem Mass Spectrometry

Constraint Graph

Tens Of Thousands

Comparative Analysis

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Nelle Varoquaux, William S. Noble, Jean-Philippe Vert
Inference of 3D genome architecture by modeling overdispersion of Hi-C data. Bioinform. 39 (1) (2023)
Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble
De novo mass spectrometry peptide sequencing with a transformer model. ICML (2022)
Jacob M. Schreiber, Timothy J. Durham, William S. Noble, Jeffrey A. Bilmes
Avocado: Deep tensor factorization characterizes the human epigenome via imputation of tens of thousands of functional experiments. BCB (2020)
Jacob M. Schreiber, Deepthi Hegde, William S. Noble
Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics. BCB (2020)
Alice Cheng, Charles E. Grant, William S. Noble, Timothy L. Bailey
MoMo: discovery of statistically significant post-translational modification motifs. Bioinform. 35 (16) (2019)
Wenruo Bai, Jeffrey A. Bilmes, William S. Noble
Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Michael Mommert, Michael S. P. Kelley, Miguel de Val-Borro, Jian-Yang Li, Giannina Guzman, Brigitta M. Sipocz, Josef Durech, Mikael Granvik, William S. Noble, Nick Moskovitz, Antti Penttilä, Nalin Samarasinha
sbpy: A Python module for small-body planetary astronomy. J. Open Source Softw. 4 (38) (2019)
Aakash Sur, Jackie McDonald, Bryan Jensen, William S. Noble, Peter J. Myler
Unveiling Elements of Genomic Architecture with Genome Wide Chromatin Conformation Capture. AMIA (2018)
Shengjie Wang, Haoran Cai, Jeff A. Bilmes, William S. Noble
Training Compressed Fully-Connected Networks with a Density-Diversity Penalty. ICLR (Poster) (2017)
Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein
HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps. Bioinform. 33 (14) (2017)
Jacob M. Schreiber, William S. Noble
Finding the optimal bayesian network given a constraint graph. PeerJ Prepr. 5 (2017)
Jacob M. Schreiber, William S. Noble
Finding the optimal Bayesian network given a constraint graph. PeerJ Comput. Sci. 3 (2017)
Wenruo Bai, Jeffrey A. Bilmes, William S. Noble
Bipartite matching generalizations for peptide identification in tandem mass spectrometry. BCB (2016)
Shengjie Wang, John T. Halloran, Jeff A. Bilmes, William S. Noble
Faster and more accurate graphical model identification of tandem mass spectra using trellises. Bioinform. 32 (12) (2016)
Timothy L. Bailey, James Johnson, Charles E. Grant, William S. Noble
The MEME Suite. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park
Comparative analysis of metazoan chromatin organization Open. Nat. 512 (7515) (2014)
Soyoung Ryu, David R. Goodlett, William S. Noble, Vladimir N. Minin
A statistical approach to peptide identification from clustered tandem mass spectrometry data. BIBM Workshops (2012)
Jens Gramm, Richard M. Karp, William S. Noble, Roded Sharan, Qianfei Wang, Nir Yosef
Prediction of Phenotype Information from Genotype Data. Commun. Inf. Syst. 10 (2) (2010)