Joshua Wing Kei Ho

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 11

Top Topics

Gene Expression

Sequenced Genomes

Top Venues

Comput. Biol. Chem.

Publications

Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-Ling Wang, Chi Ho Lin, Agnes Sze Wah Chan, Wai Keung Leung, Suet Yi Leung, Joshua Wing Kei Ho
Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (3) (2022)
Eddie Ip, Clinton Hadinata, Joshua Wing Kei Ho, Eleni Giannoulatou
dv-trio: a family-based variant calling pipeline using DeepVariant. Bioinform. 36 (11) (2020)
Djordje Djordjevic, Joshua Y. S. Tang, Yun Xin Chen, Shu Lun Shannon Kwan, Raymond W. K. Ling, Gordon Qian, Chelsea Y. Y. Woo, Samuel J. Ellis, Joshua Wing Kei Ho
Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus. Comput. Biol. Chem. 80 (2019)
Xiaoxin Ye, Joshua Wing Kei Ho
Ultrafast clustering of single-cell flow cytometry data using FlowGrid. BMC Syst. Biol. (2) (2019)
Md Humayun Kabir, Djordje Djordjevic, Michael D. O'Connor, Joshua Wing Kei Ho
C3: An R package for cross-species compendium-based cell-type identification. Comput. Biol. Chem. 77 (2018)
Atul Kakrana, Andrian Yang, Deepti Anand, Djordje Djordjevic, S. Deepthi Ramachandruni, Abhyudai Singh, Hongzhan Huang, Joshua Wing Kei Ho, Salil A. Lachke
iSyTE 2.0: a database for expression-based gene discovery in the eye. Nucleic Acids Res. 46 (Database-Issue) (2018)
Pengyi Yang, Andrew J. Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang, Joshua Wing Kei Ho
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. Bioinform. 33 (13) (2017)
Andrian Yang, Michael Troup, Peijie Lin, Joshua Wing Kei Ho
Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. Bioinform. 33 (5) (2017)
Joshua Y. S. Tang, Andrian Yang, Tsong Yueh Chen, Joshua Wing Kei Ho
Harnessing Multiple Source Test Cases in Metamorphic Testing: A Case Study in Bioinformatics. MET@ICSE (2017)
Michael Troup, Andrian Yang, Amir Hossein Kamali, Eleni Giannoulatou, Tsong Yueh Chen, Joshua Wing Kei Ho
A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline. MET@ICSE (2016)
Djordje Djordjevic, Kenro Kusumi, Joshua Wing Kei Ho
XGSA: A statistical method for cross-species gene set analysis. Bioinform. 32 (17) (2016)
Kyung-Ah Sohn, Joshua Wing Kei Ho, Djordje Djordjevic, Hyun-hwan Jeong, Peter J. Park, Ju Han Kim
hiHMM: Bayesian non-parametric joint inference of chromatin state maps. Bioinform. 31 (13) (2015)
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park
Comparative analysis of metazoan chromatin organization Open. Nat. 512 (7515) (2014)
Eleni Giannoulatou, Shin-Ho Park, David T. Humphreys, Joshua Wing Kei Ho
Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie. BMC Bioinform. 15 (S-16) (2014)
Pengyi Yang, Joshua Wing Kei Ho, Jean Yee Hwa Yang, Bing Bing Zhou
Gene-gene interaction filtering with ensemble of filters. BMC Bioinform. 12 (S-1) (2011)
Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho, Michael A. Charleston, Tsong Yueh Chen
Verification of phylogenetic Inference Programs Using Metamorphic Testing. J. Bioinform. Comput. Biol. 9 (6) (2011)
Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen
Testing and validating machine learning classifiers by metamorphic testing. J. Syst. Softw. 84 (4) (2011)
Pengyi Yang, Joshua Wing Kei Ho, Albert Y. Zomaya, Bing Bing Zhou
A genetic ensemble approach for gene-gene interaction identification. BMC Bioinform. 11 (2010)
Md. Rafiul Hassan, M. Maruf Hossain, James Bailey, Geoff MacIntyre, Joshua Wing Kei Ho, Kotagiri Ramamohanarao
A voting approach to identify a small number of highly predictive genes using multiple classifiers. BMC Bioinform. 10 (S-1) (2009)
Tsong Yueh Chen, Joshua Wing Kei Ho, Huai Liu, Xiaoyuan Xie
An innovative approach for testing bioinformatics programs using metamorphic testing. BMC Bioinform. 10 (2009)
Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen
Application of Metamorphic Testing to Supervised Classifiers. QSIC (2009)
Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston
Differential variability analysis of gene expression and its application to human diseases. ISMB (2008)
Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Hong, Uwe Röhm, David Cho Yau Fung, Kai Xu, Tim Kraska, David Hart
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database. CGIV (2006)
Joshua Wing Kei Ho, Cameron E. Adams, Jie Bin Lew, Timothy J. Matthews, Chiu Chin Ng, Arash Shahabi-Sirjani, Leng Hong Tan, Yu Zhao, Simon Easteal, Susan R. Wilson, Lars S. Jermiin
SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides. Bioinform. 22 (17) (2006)
Adel Ahmed, Tim Dwyer, Michael Forster, Xiaoyan Fu, Joshua Wing Kei Ho, Seok-Hee Hong, Dirk Koschützki, Colin Murray, Nikola S. Nikolov, Ronnie Taib, Alexandre Tarassov, Kai Xu
GEOMI: GEOmetry for Maximum Insight. Graph Drawing (2005)
Joshua Wing Kei Ho, Seok-Hee Hong
Drawing Clustered Graphs in Three Dimensions. Graph Drawing (2005)