Michael A. Charleston

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 10

Top Topics

Subgraph Isomorphism

Greedy Algorithm

Space Complexity

Top Venues

J. Comput. Biol.

Publications

Raima Carol Appaw, Nicholas Fountain-Jones, Michael A. Charleston
What makes a small-world network? Leveraging machine learning for the robust prediction and classification of networks. CoRR (2024)
Martin McGrane, Michael A. Charleston
Biological Network Edit Distance. J. Comput. Biol. 23 (9) (2016)
Vincent Gramoli, Michael A. Charleston, Bryn Jeffries, Irena Koprinska, Martin McGrane, Alex Radu, Anastasios Viglas, Kalina Yacef
Mining autograding data in computer science education. ACSW (2016)
Benjamin Drinkwater, Michael A. Charleston
Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem. Algorithms Mol. Biol. 11 (2016)
Benjamin Drinkwater, Michael A. Charleston
RASCAL: A Randomized Approach for Coevolutionary Analysis. J. Comput. Biol. 23 (3) (2016)
Benjamin Drinkwater, Michael A. Charleston
A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies. WABI (2015)
Cali E. Willet, Bianca Haase, Michael A. Charleston, Claire M. Wade
Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker. Bioinform. 31 (4) (2015)
Alistair M. Senior, Michael A. Charleston, Mathieu Lihoreau, Jérôme Buhl, David Raubenheimer, Stephen J. Simpson
Evolving Nutritional Strategies in the Presence of Competition: A Geometric Agent-Based Model. PLoS Comput. Biol. 11 (3) (2015)
Alex Radu, Michael A. Charleston
Node Handprinting: A Scalable and Accurate Algorithm for Aligning Multiple Biological Networks. J. Comput. Biol. 22 (7) (2015)
Benjamin Drinkwater, Michael A. Charleston
A time and space complexity reduction for coevolutionary analysis of trees generated under both a Yule and Uniform model. Comput. Biol. Chem. 57 (2015)
Benjamin Drinkwater, Michael A. Charleston
Introducing TreeCollapse: a novel greedy algorithm to solve the cophylogeny reconstruction problem. BMC Bioinform. 15 (S-16) (2014)
Alex Radu, Michael A. Charleston
Node Fingerprinting: An Efficient Heuristic for Aligning Biological Networks. J. Comput. Biol. 21 (10) (2014)
Ilana Lichtenstein, Michael A. Charleston, Tibério S. Caetano, Jennifer R. Gamble, Mathew A. Vadas
Active Subnetwork Recovery with a Mechanism-Dependent Scoring Function; with application to Angiogenesis and Organogenesis studies. BMC Bioinform. 14 (2013)
Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho, Michael A. Charleston, Tsong Yueh Chen
Verification of phylogenetic Inference Programs Using Metamorphic Testing. J. Bioinform. Comput. Biol. 9 (6) (2011)
Ran Libeskind-Hadas, Michael A. Charleston
On the Computational Complexity of the Reticulate Cophylogeny Reconstruction Problem. J. Comput. Biol. 16 (1) (2009)
Jeremy G. Sumner, Michael A. Charleston
Phylogenetic estimation with partial likelihood tensors CoRR (2008)
Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston
Differential variability analysis of gene expression and its application to human diseases. ISMB (2008)
Ali Al Mazari, Albert Y. Zomaya, Michael A. Charleston, Roger J. Garsia
A Novel Algorithm for Adaptive and Neutral Evolutionary Patterns Associated with HIV Drug Resistance. AICCSA (2007)
Michael A. Charleston, Susan L. Perkins
Traversing the tangle: Algorithms and applications for cophylogenetic studies. J. Biomed. Informatics 39 (1) (2006)
Michael A. Charleston, Alison P. Galvani
A cophylogenetic perspective on host-pathogen evolution. Disease Evolution: Models, Concepts, and Data Analyses (2006)
Michael A. Charleston
Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem. J. Comput. Biol. 8 (1) (2001)
Michael A. Charleston
Spectrum: spectral analysis of phylogenetic data. Bioinform. 14 (1) (1998)
Roderic D. M. Page, Michael A. Charleston
Reconciled trees and incongruent gene and species trees. Mathematical Hierarchies and Biology (1996)
Michael A. Charleston
Toward a Characterization of Landscapes of Combinatorial Optimization Problems, with Special Attention to the Phylogeny Problem. J. Comput. Biol. 2 (3) (1995)
Michael A. Charleston, Michael D. Hendy, David Penny
The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic Methods. J. Comput. Biol. 1 (2) (1994)