Abhyudai Singh

ORCID

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 96

Top Venues

Publications

Sayeh Rezaee, César Nieto, Abhyudai Singh
Optimizing Precision in Cellular Clocks Through Self-Regulated Accumulation Of Molecules. ICSTCC (2023)
Iryna Zabaikina, Zhanhao Zhang, César Nieto, Pavol Bokes, Abhyudai Singh
Amplification of noisy gene expression by protein burden: An analytical approach. ACC (2023)
Sayeh Rezaee, César Nieto, Zahra Vahdat, Abhyudai Singh
Stochastic dynamics of the logistic growth model subjected to environmental perturbations. CCTA (2023)
Zhanhao Zhang, César Nieto, Abhyudai Singh
Comparing Negative Feedback Mechanisms in Gene Expression: From Single Cells to Cell Populations. CDC (2023)
Pavol Bokes, Anna Hlubinová, Abhyudai Singh
Reversible Transitions in a Fluctuation Assay Modify the Tail of Luria-Delbrück Distribution. Axioms 12 (3) (2023)
Iryna Zabaikina, Pavol Bokes, Abhyudai Singh
Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. CMSB (2023)
César Nieto, César Vargas-García, Juan Manuel Pedraza, Abhyudai Singh
Cell size control shapes fluctuations in colony population. CDC (2022)
César Nieto, Khem Raj Ghusinga, Abhyudai Singh
Feedback strategies for threshold crossing of protein levels at a prescribed time. MED (2022)
Zahra Vahdat, Abhyudai Singh
Frequency-dependent modulation of stochasticity in postsynaptic neuron firing times. CDC (2022)
Sayeh Rezaee, César Nieto, Abhyudai Singh
Optimal network transmission to minimize state-estimation error and channel usage. ICSTCC (2022)
Tarun Mahajan, Michael M. Saint-Antoine, Roy D. Dar, Abhyudai Singh
Limits on inferring gene regulatory networks from single-cell measurements of unstable mRNA levels. CDC (2022)
Chen Jia, Abhyudai Singh, Ramon Grima
Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis. PLoS Comput. Biol. 18 (10) (2022)
Chen Jia, Abhyudai Singh, Ramon Grima
Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach. PLoS Comput. Biol. 18 (1) (2022)
Michael M. Saint-Antoine, Ramon Grima, Abhyudai Singh
Fluctuation-based approaches to infer kinetics of cell-state switching. CDC (2022)
César Nieto, Khem Raj Ghusinga, Cesar Vargas-García, Abhyudai Singh
Threshold-crossing time statistics for size-dependent gene expression in growing cells. ACC (2022)
Tarun Mahajan, Abhyudai Singh, Roy D. Dar
Kinetic Constraints on Noise Reduction in Feedback Gene Regulatory Networks. ACC (2022)
Supravat Dey, Cesar Augusto Vargas Garcia, Abhyudai Singh
Sequestration-based feedback control of blood platelet levels. CDC (2022)
Zahra Vahdat, Abhyudai Singh
Time triggered stochastic hybrid systems with nonlinear continuous dynamics. ACC (2022)
Mohammad Soltani, Abhyudai Singh
Using fluctuation statistics to infer random forces impinging on a nanosensor. CCTA (2022)
Zahra Vahdat, Khem Raj Ghusinga, Abhyudai Singh
Comparing feedback strategies for minimizing noise in gene expression event timing. MED (2021)
Madeline Smith, Mohammad Soltani, Rahul V. Kulkarni, Abhyudai Singh
Modulation of stochastic gene expression by nuclear export processes. CDC (2021)
Niccoló Totis, Cesar Augusto Nieto-Acuna, Armin Küper, Cesar Augusto Vargas Garcia, Abhyudai Singh, Steffen Waldherr
A Population-Based Approach to Study the Effects of Growth and Division Rates on the Dynamics of Cell Size Statistics. IEEE Control. Syst. Lett. 5 (2) (2021)
Candan Çelik, Pavol Bokes, Abhyudai Singh
Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop. CMSB (2021)
Pavol Bokes, Michal Hojcka, Abhyudai Singh
MicroRNA Based Feedforward Control of Intrinsic Gene Expression Noise. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Supravat Dey, Lee Tracey, Abhyudai Singh
Role of intercellular coupling and delay on the synchronization of genetic oscillators. ACC (2021)
Saurabh Modi, Supravat Dey, Abhyudai Singh
Noise suppression in stochastic genetic circuits using PID controllers. PLoS Comput. Biol. 17 (7) (2021)
Supravat Dey, Sherin Kannoly, Pavol Bokes, John J. Dennehy, Abhyudai Singh
Feedforward genetic circuits regulate the precision of event timing. ECC (2021)
Pavol Bokes, Abhyudai Singh
A modified fluctuation test for elucidating drug resistance in microbial and cancer cells. Eur. J. Control 62 (2021)
Zhanhao Zhang, Supravat Dey, Abhyudai Singh
Role of periodic forcing on the stochastic dynamics of a biomolecular clock. ECC (2021)
Madeline Smith, Abhyudai Singh
Noise suppression by stochastic delays in negatively autoregulated gene expression. ACC (2020)
Zikai Xu, Khem Raj Ghusinga, Abhyudai Singh
Noise analysis in biochemical complex formation from stochastically produced components. ACC (2020)
Abhyudai Singh, Brooks Emerick
Hybrid systems framework for modeling host-parasitoid population dynamics. CDC (2020)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Time Delays in a Genetic Positive-Feedback Circuit. IEEE Control. Syst. Lett. 4 (1) (2020)
Zahra Vahdat, Karol Nienaltowski, Zia Farooq, Michal Komorowski, Abhyudai Singh
Information processing in unregulated and autoregulated gene expression. ECC (2020)
Iryna Zabaikina, Pavol Bokes, Abhyudai Singh
Optimal bang-bang feedback for bursty gene expression. ECC (2020)
Khem Raj Ghusinga, Abhyudai Singh
Controlling event timing precision for gene expression with external disturbances. CDC (2020)
James MacLaurin, Abhyudai Singh
The Effect of Stochastic Bursting on Biological Clock Precision. ECC (2020)
Khem Raj Ghusinga, Andrew G. Lamperski, Abhyudai Singh
Moment analysis of stochastic hybrid systems using semidefinite programming. Autom. 112 (2020)
Yao Li, Cesar Augusto Vargas Garcia, Abhyudai Singh
Stochastic stability of a cell cycle model with "silence period". ECC (2020)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Noise propagation in metabolic pathways: the role of growth-mediated feedback. CDC (2020)
Supravat Dey, Abhyudai Singh
Propagation of stochastic gene expression in the presence of decoys. CDC (2020)
Candan Çelik, Pavol Bokes, Abhyudai Singh
Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions. CMSB (2020)
Supravat Dey, Abhyudai Singh
Genomic decoy sites enhance the oscillatory regime of a biomolecular clock. ACC (2020)
Giulia Giordano, Abhyudai Singh, Franco Blanchini
Analysis of coupled genetic oscillators with delayed positive feedback interconnections. ECC (2019)
Pavol Bokes, Abhyudai Singh
Cell Volume Distributions in Exponentially Growing Populations. CMSB (2019)
Madeline Smith, Khem Raj Ghusinga, Abhyudai Singh
Comparison of feedback strategies for noise suppression in protein level. ACC (2019)
Michael M. Saint-Antoine, Abhyudai Singh
Evaluating Pruning Methods in Gene Network Inference. CIBCB (2019)
Pavol Bokes, Abhyudai Singh
Controlling Noisy Expression Through Auto Regulation of Burst Frequency and Protein Stability. HSB (2019)
Khem Raj Ghusinga, Vaibhav Srivastava, Abhyudai Singh
Driving an Ornstein-Uhlenbeck Process to Desired First-Passage Time Statistics. ECC (2019)
Mohammad Soltani, Abhyudai Singh
Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions. SIAM J. Control. Optim. 57 (4) (2019)
Pavol Bokes, Abhyudai Singh
Noise induced bimodality in genetic circuits with monostable positive feedback. ECC (2019)
Supravat Dey, Abhyudai Singh
Stochastic analysis of feedback control by molecular sequestration. ACC (2019)
Cesar Augusto Nieto-Acuna, Cesar Augusto Vargas Garcia, Abhyudai Singh, Juan Manuel Pedraza
Efficient computation of stochastic cell-size transient dynamics. BMC Bioinform. (23) (2019)
Saurabh Modi, Supravat Dey, Abhyudai Singh
Proportional and derivative controllers for buffering noisy gene expression. CDC (2019)
Zahra Vahdat, Zikai Xu, Abhyudai Singh
Modeling and characterization of neuronal synapses using stochastic hybrid systems. CDC (2019)
Andrew G. Lamperski, Khem Raj Ghusinga, Abhyudai Singh
Analysis and Control of Stochastic Systems Using Semidefinite Programming Over Moments. IEEE Trans. Autom. Control. 64 (4) (2019)
Saurabh Modi, Mohammad Soltani, Abhyudai Singh
Linear Noise Approximation for a Class of Piecewise Deterministic Markov Processes. ACC (2018)
Zikai Xu, Mohammad Soltani, Abhyudai Singh
Exact statistical moments of multi-mode stochastic hybrid systems with renewal transitions. CDC (2018)
Alberto Carignano, Sumit Mukherjee, Abhyudai Singh, Georg Seelig
Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops. CDC (2018)
Mohammad Soltani, Abhyudai Singh
Moment analysis of linear time-varying dynamical systems with renewal transitions. CoRR (2018)
Mohammad Soltani, Abhyudai Singh
Control Design and Analysis of a Stochastic Event-Driven System. CDC (2018)
Mohammad Soltani, Abhyudai Singh
Linear piecewise-deterministic Markov processes with families of random discrete events. ECC (2018)
Pavol Bokes, Michal Hojcka, Abhyudai Singh
Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation. CMSB (2018)
Khem Raj Ghusinga, Andrew G. Lamperski, Abhyudai Singh
Estimating stationary characteristic functions of stochastic systems via semidefinite programming. ECC (2018)
Atul Kakrana, Andrian Yang, Deepti Anand, Djordje Djordjevic, S. Deepthi Ramachandruni, Abhyudai Singh, Hongzhan Huang, Joshua Wing Kei Ho, Salil A. Lachke
iSyTE 2.0: a database for expression-based gene discovery in the eye. Nucleic Acids Res. 46 (Database-Issue) (2018)
Cesar Augusto Vargas Garcia, Abhyudai Singh
Elucidating Cell Size Control Mechanisms with Stochastic Hybrid Systems. CDC (2018)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Noise propagation in feedback coupling between cell growth and metabolic activity. CDC (2018)
Cenk Demir, Mohammad Soltani, Abhyudai Singh
Prediction of Projectile Impact Point using Approximate Statistical Moments. ACC (2018)
Saurabh Modi, Abhyudai Singh
Controlling organism size by regulating constituent cell numbers. CDC (2018)
Khem Raj Ghusinga, Abhyudai Singh
Effect of gene-expression bursts on stochastic timing of cellular events. ACC (2017)
Khem Raj Ghusinga, Mohammad Soltani, Andrew G. Lamperski, Sairaj V. Dhople, Abhyudai Singh
Approximate moment dynamics for polynomial and trigonometric stochastic systems. CDC (2017)
Mohammad Soltani, Abhyudai Singh
Linear piecewise-deterministic Markov processes with families of random discrete events. CoRR (2017)
Cenk Demir, Abhyudai Singh
Prediction and Control of Projectile Impact Point using Approximate Statistical Moments. CoRR (2017)
Mohammad Soltani, Abhyudai Singh
Moment-based analysis of stochastic hybrid systems with renewal transitions. Autom. 84 (2017)
Mohammad Soltani, Abhyudai Singh
Control design and analysis of a stochastic network control system. CoRR (2017)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Noise propagation in a class of metabolic networks. CDC (2017)
Ximing Chen, Masaki Ogura, Khem Raj Ghusinga, Abhyudai Singh, Victor M. Preciado
Semidefinite bounds for moment dynamics: Application to epidemics on networks. CDC (2017)
Mohammad Soltani, Abhyudai Singh
Stochastic analysis of linear time-invariant systems with renewal transitions. ACC (2017)
Cesar Augusto Vargas Garcia, Carl Agbemabiese, Abhyudai Singh
Optimal adsorption rate: Implications of the shielding effect. ACC (2017)
Joshua A. Blotnick, Cesar Augusto Vargas Garcia, John J. Dennehy, Ryan Zurakowski, Abhyudai Singh
The effect of multiplicity of infection on the temperateness of a bacteriophage: Implications for viral fitness. CDC (2017)
Abhyudai Singh
Noise mechanisms in synaptic transmission and their impact on spike-timing precision. CDC (2017)
Mohammad Soltani, Cesar Augusto Vargas Garcia, Duarte Antunes, Abhyudai Singh
Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes. PLoS Comput. Biol. 12 (8) (2016)
Mohammad Soltani, Thierry Platini, Abhyudai Singh
Stochastic analysis of an incoherent feedforward genetic motif. ACC (2016)
Mohammad Soltani, Abhyudai Singh
Moment dynamics for linear time-triggered stochastic hybrid systems. CDC (2016)
Andrew G. Lamperski, Khem Raj Ghusinga, Abhyudai Singh
Stochastic optimal control using semidefinite programming for moment dynamics. CDC (2016)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Noise reduction for enzymatic reactions: A case study for stochastic product clearance. CDC (2016)
Cesar Augusto Vargas Garcia, Mohammad Soltani, Abhyudai Singh
Stochastic hybrid systems approach to modeling dynamics of cell size. CDC (2016)
Khem Raj Ghusinga, Abhyudai Singh
Optimal regulation of protein degradation to schedule cellular events with precision. ACC (2016)
Jessica M. Conway, John J. Dennehy, Abhyudai Singh
Optimizing phage λ survival in a changing environment: Stochastic model predictions. CDC (2016)
Alessandro Borri, Pasquale Palumbo, Abhyudai Singh
Metabolic noise reduction for enzymatic reactions: The role of a negative feedback. CDC (2015)
Niraj Kumar, Abhyudai Singh, Rahul V. Kulkarni
Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models. PLoS Comput. Biol. 11 (10) (2015)
Khem Raj Ghusinga, Pak-Wing Fok, Abhyudai Singh
Optimal auto-regulation to minimize first-passage time variability in protein level. ACC (2015)
Khem Raj Ghusinga, Abhyudai Singh
Theoretical predictions on the first-passage time for a gene expression model. CDC (2015)
Mohammad Soltani, Cesar Augusto Vargas Garcia, Niraj Kumar, Rahul V. Kulkarni, Abhyudai Singh
Approximate statistical dynamics of a genetic feedback circuit. ACC (2015)
Bernie J. Daigle Jr., Mohammad Soltani, Linda R. Petzold, Abhyudai Singh
Inferring single-cell gene expression mechanisms using stochastic simulation. Bioinform. 31 (9) (2015)
Mohammad Soltani, Cesar Augusto Vargas Garcia, Abhyudai Singh
Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits. IEEE Trans. Biomed. Circuits Syst. 9 (4) (2015)
Khem Raj Ghusinga, Abhyudai Singh
First-passage time calculations for a gene expression model. CDC (2014)
Abhyudai Singh, Cesar Augusto Vargas Garcia, Rajesh Karmakar
Stochastic analysis of genetic promoter architectures with memory. CDC (2013)
Cesar Augusto Vargas Garcia, Ryan Zurakowski, Abhyudai Singh
Conditions for invasion of synapse-forming HIV variants. CDC (2013)
Duarte Antunes, Abhyudai Singh
Computing mRNA and protein statistical moments for a renewal model of stochastic gene-expression. CDC (2013)

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Publication Activity (10 Years)

Top Topics

Top Venues

Abhyudai Singh