Bernie J. Daigle Jr.

Publication Activity (10 Years)

Years Active: 2008-2021
Publications (10 Years): 7

Top Topics

Computational Molecular Biology

Simple Examples

Gene Expression

Top Venues

BMC Syst. Biol.

BMC Medical Informatics Decis. Mak.

Publications

Liangqun Lu, Kevin A. Townsend, Bernie J. Daigle Jr.
GEOlimma: differential expression analysis and feature selection using pre-existing microarray data. BMC Bioinform. 22 (1) (2021)
Vinhthuy Phan, Diem-Trang Pham, Caroline Melton, Adam J. Ramsey, Bernie J. Daigle Jr., Jennifer R. Mandel
icHET: interactive visualization of cytoplasmic heteroplasmy. Bioinform. 35 (21) (2019)
Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. BMC Bioinform. 18 (S-9) (2017)
Yuanyang Zhang, Tie Bo Wu, Bernie J. Daigle Jr., Mitchell J. Cohen, Linda R. Petzold
Identification of disease states associated with coagulopathy in trauma. BMC Medical Informatics Decis. Mak. 16 (2016)
Brian Drawert, Andreas Hellander, Benjamin B. Bales, Debjani Banerjee, Giovanni Bellesia, Bernie J. Daigle Jr., Geoffrey Douglas, Mengyuan Gu, Anand Gupta, Stefan Hellander, Christopher B. Horuk, Dibyendu Nath, Aviral Takkar, Sheng Wu, Per Lötstedt, Chandra Krintz, Linda R. Petzold
Stochastic Simulation Service: Bridging the Gap between the Computational Expert and the Biologist. PLoS Comput. Biol. 12 (12) (2016)
Min K. Roh, Bernie J. Daigle Jr.
SParSE++: improved event-based stochastic parameter search. BMC Syst. Biol. 10 (2016)
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17 (S-10) (2016)
Yuanyang Zhang, Bernie J. Daigle Jr., Mitchell J. Cohen, Linda R. Petzold
A Cure Time Model for Joint Prediction of Outcome and Time-to-Outcome. ICDM (2015)
Bernie J. Daigle Jr., Mohammad Soltani, Linda R. Petzold, Abhyudai Singh
Inferring single-cell gene expression mechanisms using stochastic simulation. Bioinform. 31 (9) (2015)
Ruoting Yang, Bernie J. Daigle Jr., Seid Y. Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle III
Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorder. BMC Syst. Biol. 7 (2013)
Bernie J. Daigle Jr., Min K. Roh, Linda R. Petzold, Jarad Niemi
Accelerated maximum likelihood parameter estimation for stochastic biochemical systems. BMC Bioinform. 13 (2012)
Ruoting Yang, Bernie J. Daigle Jr., Linda R. Petzold, Francis J. Doyle III
Core module biomarker identification with network exploration for breast cancer metastasis. BMC Bioinform. 13 (2012)
Jesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman
Independent component analysis: Mining microarray data for fundamental human gene expression modules. J. Biomed. Informatics 43 (6) (2010)
Bernie J. Daigle Jr., Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman
Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin Resistance. PLoS Comput. Biol. 6 (3) (2010)
Bernie J. Daigle Jr., Russ B. Altman
M-BISON: Microarray-based integration of data sources using networks. BMC Bioinform. 9 (2008)