Eric W. Klee

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 13

Top Topics

Hierarchical Model

Dna Copy Number

Top Venues

Publications

Jesse R. Walsh, Guangchao Sun, Jagadheshwar Balan, Jayson Hardcastle, Jason Vollenweider, Calvin Jerde, Kandelaria Rumilla, Christy Koellner, Alaa Koleilat, Linda Hasadsri, Benjamin Kipp, Garrett Jenkinson, Eric W. Klee
A supervised learning method for classifying methylation disorders. BMC Bioinform. 25 (1) (2024)
Yao Xiao, Moein Enayati, Gavin M. Schaeferle, Brendan C. Lanpher, Eric W. Klee, Che Ngufor
Enhancing Patient Care in Rare Genetic Diseases: An HPO-based Phenotyping Pipeline. BIBM (2023)
Tahmina Sultana Priya, Fan Leng, Anthony C. Luehrs, Eric W. Klee, Alina M. Allen, Konstantinos N. Lazaridis, Danfeng Yao, Shulan Tian
Deep Phenotyping of Non-Alcoholic Fatty Liver Disease Patients with Genetic Factors for Insights into the Complex Disease. CoRR (2023)
W. Garrett Jenkinson, Kia Khezeli, Gavin R. Oliver, John Kalantari, Eric W. Klee
Universally Rank Consistent Ordinal Regression in Neural Networks. CoRR (2021)
Anand Ramachandran, Steven S. Lumetta, Eric W. Klee, Deming Chen
HELLO: improved neural network architectures and methodologies for small variant calling. BMC Bioinform. 22 (1) (2021)
W. Garrett Jenkinson, Yang I Li, Shubham Basu, Margot A. Cousin, Gavin R. Oliver, Eric W. Klee
LeafCutterMD: an algorithm for outlier splicing detection in rare diseases. Bioinform. 36 (17) (2020)
Jacob R Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael Kalmbach, Katherine I Kendig, Eric W. Klee, Nathan R Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Recommendations for performance optimizations when using GATK3.8 and GATK4. BMC Bioinform. 20 (1) (2019)
Anand Ramachandran, Steven S. Lumetta, Eric W. Klee, Deming Chen
A recurrent Markov state-space generative model for sequences. AISTATS (2019)
Jacob R Heldenbrand, Saurabh Baheti, Matthew A. Bockol, Travis M. Drucker, Steven N. Hart, Matthew E. Hudson, Ravishankar K. Iyer, Michael Kalmbach, Katherine I Kendig, Eric W. Klee, Nathan R Mattson, Eric D. Wieben, Mathieu Wiepert, Derek E. Wildman, Liudmila S. Mainzer
Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4. BMC Bioinform. 20 (1) (2019)
Anand Ramachandran, Huiren Li, Eric W. Klee, Steven S. Lumetta, Deming Chen
Deep Learning for Better Variant Calling for Cancer Diagnosis and Treatment. ASP-DAC (2018)
Nicholas B. Larson, Chen Wang, Jie Na, Ross A. Rowsey, William Edward Highsmith, Nicole L. Hoppman, Jean-Pierre A. Kocher, Eric W. Klee
Improving Single-Nucleotide Polymorphism-Based Fetal Fraction Estimation of Maternal Plasma Circulating Cell-Free DNA Using Bayesian Hierarchical Models. J. Comput. Biol. 25 (9) (2018)
Shulan Tian, Huihuang Yan, Eric W. Klee, Michael Kalmbach, Susan L. Slager
Comparative analysis of de novo assemblers for variation discovery in personal genomes. Briefings Bioinform. 19 (5) (2018)
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17 (S-10) (2016)
Meghna Singh, Deeksha Bhartiya, Jayant Maini, Meenakshi Sharma, Angom Ramcharan Singh, Subburaj Kadarkaraisamy, Rajiv Rana, Ankit Sabharwal, Srishti Nanda, Aravindhakshan Ramachandran, Ashish Mittal, Shruti Kapoor, Paras Sehgal, Zainab Asad, Kriti Kaushik, Shamsudheen Karuthedath Vellarikkal, Divya Jagga, Muthulakshmi Muthuswami, Rajendra K. Chauhan, Elvin Leonard, Ruby Priyadarshini, Mahantappa Halimani, Sunny Malhotra, Ashok Patowary, Harinder Vishwakarma, Prateek Rakeshkumar Joshi, Vivek Bhardwaj, Arijit Bhaumik, Bharat Bhatt, Aamod Jha, Aalok Kumar, Prerna Budakoti, Mukesh Kumar Lalwani, Rajeshwari Meli, Saakshi Jalali, Kandarp Joshi, Koustav Pal, Heena Dhiman, Saurabh V. Laddha, Vaibhav Jadhav, Naresh Singh, Vikas Pandey, Chetana Sachidanandan, Stephen C. Ekker, Eric W. Klee, Vinod Scaria, Sridhar Sivasubbu
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. Database J. Biol. Databases Curation 2014 (2014)
Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinform. 28 (2) (2012)
Zhifu Sun, Saurabh Baheti, Sumit Middha, Rahul Kanwar, Yuji Zhang, Xing Li, Andreas S. Beutler, Eric W. Klee, Yan W. Asmann, E. Aubrey Thompson, Jean-Pierre A. Kocher
SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing. Bioinform. 28 (16) (2012)
George Vasmatzis, Eric W. Klee, Dagmar M. Kube, Terry M. Therneau, Farhad Kosari
Quantitating tissue specificity of human genes to facilitate biomarker discovery. Bioinform. 23 (11) (2007)
Eric W. Klee, Lynda B. M. Ellis
Evaluating eukaryotic secreted protein prediction. BMC Bioinform. 6 (2005)
Eric W. Klee, Kyong Jin Shim, Michael A. Pickart, Stephen C. Ekker, Lynda B. M. Ellis
AMOD: a morpholino oligonucleotide selection tool. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)