Jerzy W. Jaromczyk

Publication Activity (10 Years)

Years Active: 1981-2024
Publications (10 Years): 7

Top Topics

Clustering Gene Expression Data

Redescription Mining

Computational Molecular Biology

Top Venues

ACM Southeast Regional Conference

Publications

Andrew C. Tapia, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
RNA-clique: a method for computing genetic distances from RNA-seq data. BMC Bioinform. 25 (1) (2024)
Oscar Skean, Richard Ehrenborg, Jerzy W. Jaromczyk
Optimization Perspectives on Shellsort. CoRR (2023)
Gregory L. Heileman, Hayden W. Free, Johnny Flynn, Camden Mackowiak, Jerzy W. Jaromczyk, Chaouki T. Abdallah
Curricular Complexity Versus Quality of Computer Science Programs. CoRR (2020)
Luke de Castro, Jerzy W. Jaromczyk
An exercise in repeating experimental analysis using a program developed on a no longer available computing system. ACM Southeast Regional Conference (2018)
Daniel R. Harris, Ramakanth Kavuluru, Jerzy W. Jaromczyk, Todd R. Johnson
Rapid and Reusable Text Visualization and Exploration Development with DELVE. CRI (2017)
Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. BMC Bioinform. 18 (S-9) (2017)
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17 (S-10) (2016)
Roger G. Chui, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
Validation and quality assurance for genome browser database exports. BMC Bioinform. 16 (S15) (2015)
Neil Moore, Jerzy W. Jaromczyk, Christopher L. Schardl, Joedocei Hill, Devin Wright
Automating deployment of several GBrowse instances. BMC Bioinform. 15 (S-10) (2014)
Mark L. Farman, Patrick Calie, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Neil Moore, Daniel R. Harris, Christopher L. Schardl
An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis. BMC Bioinform. 15 (S-10) (2014)
Matthew Fahrbach, Jerzy W. Jaromczyk, Roy David Mobley, Neil Moore
Video game bots as a theme for student software competitions. CGAMES (2014)
Tyler Parke, Mark L. Farman, Elizabeth Farnsworth, Derek Fox, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Neil Moore, Christopher L. Schardl, Ruriko Yoshida, Patrick Calie
Using HPC for teaching and learning bioinformatics software: Benefits and challenges. BMC Bioinform. 14 (S-17) (2013)
Roger G. Chui, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
FPD2GB2: Automating a transition from a customized genome browser to GBrowse2. BMC Bioinform. 14 (S-17) (2013)
Radu Paul Mihail, Judy Goldsmith, Nathan Jacobs, Jerzy W. Jaromczyk
Teaching graphics for games using Microsoft XNA. CGAMES (2013)
Jerzy W. Jaromczyk, Zbigniew Lonc, Miroslaw Truszczynski
Constructions of asymptotically shortest k-radius sequences. J. Comb. Theory, Ser. A 119 (3) (2012)
Zhenmin Lin, Jerzy W. Jaromczyk
An efficient secure comparison protocol. ISI (2012)
Neil Moore, Jerzy W. Jaromczyk, Christopher L. Schardl
Finding long protein products of alternatively spliced genes. BMC Bioinform. 13 (S-12) (2012)
Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
A linear-time algorithm for finding a maximum-length ORF in a splice graph. Int. J. Comput. Biol. Drug Des. 5 (3/4) (2012)
Levon Ter-Isahakyan, Jerzy W. Jaromczyk
Modelling car drivers as believable autonomous agents for a traffic control training game. CGAMES (2012)
Zhenmin Lin, Jerzy W. Jaromczyk
Privacy preserving two-party k-means clustering over vertically partitioned dataset. ISI (2011)
Neil Moore, Jerzy W. Jaromczyk
Finding a longest open reading frame of an alternatively spliced gene. BIBM Workshops (2011)
Zhenmin Lin, Jerzy W. Jaromczyk
Privacy preserving spectral clustering over vertically partitioned data sets. FSKD (2011)
Weixi Li, Jerzy W. Jaromczyk
MSCTrees: a mean-shift based toolkit for cluster analysis of phylogenetic trees. BMC Bioinform. 12 (S-7) (2011)
Elissaveta G. Arnaoudova, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl, Ruriko Yoshida
- a toolkit for computing experiments with distance-based methods for genome coevolution. BMC Bioinform. 11 (S-4) (2010)
Daniel R. Harris, Jerzy W. Jaromczyk, Christopher L. Schardl
Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster. BMC Bioinform. 11 (S-4) (2010)
Elissaveta G. Arnaoudova, Philip J. Bowens, Roger G. Chui, Randy D. Dinkins, Uljana Hesse, Jerzy W. Jaromczyk, Mitchell Martin, Paul Maynard, Neil Moore, Christopher L. Schardl
Visualizing and sharing results in bioinformatics projects: GBrowse and GenBank exports. BMC Bioinform. 10 (S-7) (2009)
Zachary S. Ware, Lisbeth A. Selby, Jerzy W. Jaromczyk
MedSurv: a software application for creating, conducting and managing medical surveys and questionnaires. BMC Bioinform. 9 (S-7) (2008)
Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort
Making the SAT decision Based on a DNA Computation. IEEE Congress on Evolutionary Computation (2007)
Joshua W. Gilkerson, Jerzy W. Jaromczyk
The genetic algorithm scheme for consensus sequences. IEEE Congress on Evolutionary Computation (2007)
Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort
Simulations of Microreactors: The Order of Things. DNA (2006)
Alex Dekhtyar, Ionut Emil Iacob, Jerzy W. Jaromczyk, Kevin Kiernan, Neil Moore, Dorothy C. Porter
Support for XML markup of image-based electronic editions. Int. J. Digit. Libr. 6 (1) (2006)
Alex Dekhtyar, Ionut Emil Iacob, Jerzy W. Jaromczyk, Kevin Kiernan, Neil Moore, Dorothy C. Porter
Building Image-based Electronic Editions using the Edition Production Technology. Bull. IEEE Tech. Comm. Digit. Libr. 2 (1) (2005)
Alex Dekhtyar, Ionut Emil Iacob, Jerzy W. Jaromczyk, Kevin Kiernan, Neil Moore, Dorothy C. Porter
Building image-based electronic editions using the edition production technology. JCDL (2005)
Danny van Noort, Yuan Hong, Joseph Ibershoff, Jerzy W. Jaromczyk
Simulation and Visualization for DNA Computing in Microreactors. ICNC (2) (2005)
Jerzy W. Jaromczyk, Miroslaw Kowaluk, Neil Moore
On Visualization of Complex Image-Basedmarkup. ICCVG (2004)
Jerzy W. Jaromczyk, Zbigniew Lonc
Sequences of Radius k: How to Fetch Many Huge Objects into Small Memory for Pairwise Computations. ISAAC (2004)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
Editorial. Comput. Geom. 27 (1) (2004)
Peter A. Hardy, Jerzy W. Jaromczyk, Paul J. Thacker
Visualizing Articular Cartilage using Expectation Maximization to Compare Segmentation Ofmrimages by Independent raters. ICCVG (2004)
Jerzy W. Jaromczyk, Miroslaw Kowaluk, Neil Moore
A web interface to image-based concurrent markup using image maps. WIDM (2004)
Mark L. Farman, Joshua W. Gilkerson, Jerzy W. Jaromczyk, Chuck Staben
RepeatAssembler: A Package for Annotation of Full-Length Repetitive DNA Sequences in Fungal Genomes. CSB (2004)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
Sets of lines and cutting out polyhedral objects. Comput. Geom. 25 (1-2) (2003)
Jerzy W. Jaromczyk, Yang Wang
Local optimization of triangular surface meshes for general quadrics in lp norm. CCCG (2001)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
The Face-Wise Continuity in Hot Wire Cutting of Polyhedral Sets. EuroCG (2000)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
A geometric proof of the combinatorial bounds for the number of optimal solutions for the Euclidean 2-center problem. Comput. Geom. 14 (4) (1999)
Jerzy W. Jaromczyk, Grzegorz Swiatek
A Theory of Even Functionals and Their Algorithmic Applications. Theor. Comput. Sci. 154 (1) (1996)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
A geometric proof of the combinatorial bounds the number of optimal solutions for the 2-center euclidean problem. CCCG (1995)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
The Two-Line Center Problem from a Polar View: A New Algorithm and Data Structure. WADS (1995)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
An Efficient Algorithm for the Euclidean Two-Center Problem. SCG (1994)
Jerzy W. Jaromczyk, Grzegorz W. Wasilkowski
Computing Convex Hull in a Floating Point Arithmetic. Comput. Geom. 4 (1994)
Jerzy W. Jaromczyk, Grzegorz W. Wasilkowski
Numerical Stability of a Convex Hull Algorithm for Simple Polygons. Algorithmica 10 (6) (1993)
Jerzy W. Jaromczyk, Grzegorz Swiatek
A Theory of Even Functionals and Their Algorithmic Applications. ICALP (1993)
Jerzy W. Jaromczyk, Godfried T. Toussaint
Relative neighborhood graphs and their relatives. Proc. IEEE 80 (9) (1992)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
Constructing the relative neighborhood graph in 3-dimensional Euclidean space. Discret. Appl. Math. 31 (2) (1991)
Jerzy W. Jaromczyk, Grzegorz Swiatek
A role of lower semicontinuous functions in the combinatorial complexity of geometric problems. J. Complex. 7 (2) (1991)
Robert L. (Scot) Drysdale III, Jerzy W. Jaromczyk
A Note on Lower Bounds for the Maximum Area and Maximum Perimeter (kappa)k-gon Problems. Inf. Process. Lett. 32 (6) (1989)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
Skewed Projections with an Application to Line Stabbing in R3. SCG (1988)
Jerzy W. Jaromczyk, Miroslaw Kowaluk
A Note on Relative Neighborhood Graphs. SCG (1987)
Jerzy W. Jaromczyk, V. Wiktor Marek
Investigating Logical Properties of the Rule-Based Expert Systems Using Combinatorial and Geometrical Techniques I. ISMIS (1987)
Jerzy W. Jaromczyk
Lower Bounds for Polygon Simplicity Testing and Other Problems. MFCS (1984)
Jerzy W. Jaromczyk
Some results on decision trees with relations to computational trees. Symposium on Computation Theory (1984)
Jerzy W. Jaromczyk
Lower Bounds for Problems Defined by Polynomial Inequalities. FCT (1981)
Jerzy W. Jaromczyk
An Extension of Rabin's Complete Proof Concept. MFCS (1981)
Jerzy W. Jaromczyk
Linear Decision Trees are too Weak for Convex Hull Problem. Inf. Process. Lett. 12 (3) (1981)