Eric C. Rouchka

Publication Activity (10 Years)

Years Active: 1998-2020
Publications (10 Years): 11

Top Topics

International Workshop

Knowledge Society

Differential Expression

Computational Molecular Biology

Top Venues

Nucleic Acids Res.

Publications

Jae Yeon Hwang, Sungbo Jung, Tae L. Kook, Eric C. Rouchka, Jinwoong Bok, Juw Won Park
rMAPS2: an update of the RNA map analysis and plotting server for alternative splicing regulation. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida
DRETools: A tool-suite for differential RNA editing detection. F1000Research 7 (2018)
Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017. BMC Bioinform. 18 (S-9) (2017)
Julia H. Chariker, Yihang Zhang, John R. Pani, Eric C. Rouchka
Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates. Scientometrics 111 (3) (2017)
Mohamed Chaabane, Eric C. Rouchka, Juw Won Park
Circular RNA Detection from High-throughput Sequencing. RACS (2017)
Eric C. Rouchka, Julia Chariker, David Tieri, Juw Won Park
Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: bioinformatics. BMC Bioinform. 18 (1) (2017)
Juw Won Park, Sungbo Jung, Eric C. Rouchka, Yu-Ting Tseng, Yi Xing
rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Ernur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka
Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data sets. ICCABS (2016)
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains
Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016. BMC Bioinform. 17 (S-10) (2016)
Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison
Proceedings of the Fourteenth Annual UT- KBRIN Bioinformatics Summit 2015. BMC Bioinform. 16 (S15) (2015)
Sen Yao, Robert M. Flight, Eric C. Rouchka, Hunter N. B. Moseley
A less biased analysis of metalloproteins' coordination geometries. BCB (2015)
Benjamin J. Harrison, Robert M. Flight, Abdallah M. Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska
UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm? BMC Bioinform. 15 (S-10) (2014)
Yan Zhang, Michelle Barati, Ignacio Munoz, Ming Li, Danny Wilkey, Eric C. Rouchka, Michael Merchant
Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells. BMC Bioinform. 15 (S-10) (2014)
Abdallah M. Eteleeb, Hunter N. B. Moseley, Eric C. Rouchka
A comparison of combined p-value methods for gene differential expression using RNA-seq data. BCB (2014)
Eric C. Rouchka, Julia H. Chariker
Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014. BMC Bioinform. 15 (S-10) (2014)
Eric C. Rouchka, Robert M. Flight
Proceedings of the Twelfth Annual UT-ORNL-KBRIN Bioinformatics Summit 2013. BMC Bioinform. 14 (S-17) (2013)
Abdallah Eteleeb, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
An Island-Based Approach for Differential Expression Analysis. BCB (2013)
Ernur Saka, Eric C. Rouchka
Poster: Image registration and visualization tool for in-situ gene expression images. ICCABS (2012)
Gopinath Rajadinakaran, Huifang Sun, Claire Rinehart, Eric C. Rouchka, Michael E. Smith
Regulation of cell proliferation and apoptosis by growth hormone during zebrafish auditory hair cell regeneration. BMC Bioinform. 13 (S-12) (2012)
Eric C. Rouchka, Robert M. Flight, Hunter N. B. Moseley
Proceedings of the Eleventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2012. BMC Bioinform. 13 (S-12) (2012)
Benjamin J. Harrison, Robert M. Flight, Abdallah Eteleeb, Eric C. Rouchka, Jeffrey C. Petruska
RNASeq profiling of UTR expression during neuronal plasticity. BMC Bioinform. 13 (S-12) (2012)
Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
AbsIDconvert: An absolute approach for converting genetic identifiers at different granularities. BMC Bioinform. 13 (2012)
Marc Beck, Eric C. Rouchka, Roman V. Yampolskiy
Finding Data in DNA: Computer Forensic Investigations of Living Organisms. ICDF2C (2012)
Eric C. Rouchka, Robert M. Flight, Ramin Homayouni
Proceedings of the Tenth Annual UT-ORNL-KBRIN Bioinformatics Summit 2011. BMC Bioinform. 12 (S-7) (2011)
Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
A Heuristic Algorithm for Detecting Intercellular Interactions. BIBE (2011)
Fahim Mohammad, Robert M. Flight, Benjamin J. Harrison, Jeffrey C. Petruska, Eric C. Rouchka
Interval Trees for Detection of Overlapping Genetic Entities. BIBE (2011)
Rami N. Mahdi, Eric C. Rouchka
Reduced HyperBF Networks: Regularization by Explicit Complexity Reduction and Scaled Rprop-Based Training. IEEE Trans. Neural Networks 22 (5) (2011)
John Kirtley, Eric C. Rouchka, Robert M. Flight, Palaniappan Sethu, John W. Eaton, Robert S. Keynton
Meta-analysis of gene expression changes in response to radiation exposure. BMC Bioinform. 12 (S-7) (2011)
Dazhuo Li, Eric C. Rouchka
Integrative biclustering of heterogeneous datasets using a Bayesian nonparametric model with application to chemogenomics. BMC Bioinform. 12 (S-7) (2011)
Robert M. Flight, Jeffrey C. Petruska, Benjamin J. Harrison, Eric C. Rouchka
categoryCompare: high-throughput data meta-analysis using gene annotations. BMC Bioinform. 12 (S-7) (2011)
Christy M. Gearheart, Eric C. Rouchka, Benjamin Arazi
Design of a DNA-based shift register. BMC Bioinform. 11 (S-4) (2010)
Dazhuo Li, Fahim Mohammad, Eric C. Rouchka
A Bayesian Nonparametric Model for Joint Relation Integration and Domain Clustering. ICMLA (2010)
Eric C. Rouchka, Diego E. Montoya-Durango, Vilius Stribinskis, Kenneth S. Ramos, Ted Kalbfleisch
Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data. BMC Bioinform. 11 (S-9) (2010)
Bing Wang, Fahim Mohammad, Jun Zhang, Xinmin Yin, Eric C. Rouchka, Xiang Zhang
Statistical analysis of multiple significance test methods for differential proteomics. BMC Bioinform. 11 (S-4) (2010)
Christy M. Gearheart, Benjamin Arazi, Eric C. Rouchka
DNA-based random number generation in security circuitry. Biosyst. 100 (3) (2010)
Eric C. Rouchka, Robert M. Flight, Claire Rinehart
Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010. BMC Bioinform. 11 (S-4) (2010)
Dazhuo Li, Eric C. Rouchka, Patrick Shafto
Phylogenomic Analysis Using Bayesian Congruence Measuring. BICoB (2010)
Rami N. Mahdi, Eric C. Rouchka
Feature Selection in Cancer Classification from mRNA Data Based on Localized Dimension Reduction. ICMLA (2009)
Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper
Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements. BICoB (2009)
Eric C. Rouchka, Julia Krushkal
Proceedings of the Eighth Annual UT-ORNL-KBRIN Bioinformatics Summit 2009. BMC Bioinform. 10 (S-7) (2009)
Dar-Jen Chang, Ahmed H. Desoky, Ming Ouyang, Eric C. Rouchka
Compute Pairwise Manhattan Distance and Pearson Correlation Coefficient of Data Points with GPU. SNPD (2009)
Joseph Morris, Eric C. Rouchka, David Schultz
expressed sequence tags. BMC Bioinform. 9 (S-7) (2008)
Christy M. Bogard, Eric C. Rouchka, Benjamin Arazi
Random number generation for DNA-based security circuitry. BMC Bioinform. 9 (S-7) (2008)
Rami N. Mahdi, Eric C. Rouchka
Buffered codons in human transcriptional units. BMC Bioinform. 9 (S-7) (2008)
Eric C. Rouchka, Julia Krushkal, Daniel Goldowitz
Proceedings of the Seventh Annual UT-ORNL-KBRIN Bioinformatics Summit 2008. BMC Bioinform. 9 (S-7) (2008)
Rami N. Mahdi, Eric C. Rouchka
Model Based Unsupervised Learning Guided by Abundant Background Samples. ICMLA (2008)
Kuo-Chen Li, Dar-Jen Chang, Eric C. Rouchka, Yuan Yan Chen
Biological Sequence Mining Using Plausible Neural Network and its Application to Exon/intron Boundaries Prediction. CIBCB (2007)
Eric C. Rouchka, C. Timothy Hardin
rMotifGen: random motif generator for DNA and protein sequences. BMC Bioinform. 8 (2007)
Eric C. Rouchka
Aligning DNA sequences using dynamic programming. ACM Crossroads 13 (1) (2006)
Eric C. Rouchka, Abdelnaby Khalyfa, Nigel G. F. Cooper
MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays. BMC Bioinform. 6 (2005)
C. Timothy Hardin, Eric C. Rouchka
DNA motif detection using particle swarm optimization and expectation-maximization. SIS (2005)
I. Elizabeth Cha, Eric C. Rouchka
Comparison of Current BLAST Software on Nucleotide Sequences. IPDPS (2005)
William A. Thompson, Eric C. Rouchka, Charles E. Lawrence
Gibbs Recursive Sampler: finding transcription factor binding sites. Nucleic Acids Res. 31 (13) (2003)
Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB (2000)
Thomas W. Blackwell, Eric C. Rouchka, David J. States
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB (1999)
Eric C. Rouchka, David J. States
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB (1998)