Shizuka Uchida

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 9

Top Topics

Secondary Structure

Genomic Sequences

Top Venues

Briefings Bioinform.

Publications

Rebecca Distefano, Mirolyuba Ilieva, Jens Hedelund Madsen, Shizuka Uchida
CrohnDB: A Web Database for Expression Profiling of Protein-Coding and Long Non-Coding RNA Genes in Crohn Disease. Comput. 11 (6) (2023)
Tyler Weirick, Raphael Rene Müller, Shizuka Uchida
Increasing workflow development speed and reproducibility with Vectools. F1000Research 7 (2018)
Tyler Weirick, Giuseppe Militello, Yuliya Ponomareva, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida
Logic programming to infer complex RNA expression patterns from RNA-seq data. Briefings Bioinform. 19 (2) (2018)
Tyler Weirick, Patrick J. Trainor, Eric C. Rouchka, Andrew P. DeFilippis, Shizuka Uchida
DRETools: A tool-suite for differential RNA editing detection. F1000Research 7 (2018)
David John, Tyler Weirick, Stefanie Dimmeler, Shizuka Uchida
RNAEditor: easy detection of RNA editing events and the introduction of editing islands. Briefings Bioinform. 18 (6) (2017)
Tyler Weirick, David John, Shizuka Uchida
Resolving the problem of multiple accessions of the same transcript deposited across various public databases. Briefings Bioinform. 18 (2) (2017)
Giuseppe Militello, Tyler Weirick, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida
Screening and validation of lncRNAs and circRNAs as miRNA sponges. Briefings Bioinform. 18 (5) (2017)
Tyler Weirick, Giuseppe Militello, Raphael Mueller, David John, Stefanie Dimmeler, Shizuka Uchida
The identification and characterization of novel transcripts from RNA-seq data. Briefings Bioinform. 17 (4) (2016)
Tyler Weirick, David John, Stefanie Dimmeler, Shizuka Uchida
C-It-Loci: a knowledge database for tissue-enriched loci. Bioinform. 31 (21) (2015)
Pascal Gellert, Katharina Jenniches, Thomas Braun, Shizuka Uchida
C-It: a knowledge database for tissue-enriched genes. Bioinform. 26 (18) (2010)
Pascal Gellert, Shizuka Uchida, Thomas Braun
Exon Array Analyzer: a web interface for Affymetrix exon array analysis. Bioinform. 25 (24) (2009)