Vinhthuy Phan

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 15

Top Topics

Introductory Computer Science

Escherichia Coli

Interactive Visual

Pairwise Comparisons

Top Venues

Publications

Alina Zaman, Amy Cook, Vinhthuy Phan, Alistair Windsor
A Practical Strategy for Training Graduate CS Teaching Assistants to Provide Effective Feedback. ITiCSE (1) (2023)
Kritish Pahi, Vinhthuy Phan
A Cloud-Based Technology for Conducting In-class Exercises in Data Science and Machine Learning Courses. SIGCSE (1) (2023)
Alina Zaman, Vinhthuy Phan, Amy Cook
Enabling In-Class Peer Feedback on Introductory Computer Science Coding Exercises. SIGCSE (2) (2022)
Amy Cook, Vinhthuy Phan, Alistair Windsor
Improving TA Feedback on In-Class Coding Assignments for Introductory Computer Science. ITiCSE (1) (2022)
Amy Cook, Alina Zaman, Eric Hicks, Kriangsiri Malasri, Vinhthuy Phan
Try That Again! How a Second Attempt on In-Class Coding Problems Benefits Students in CS1. SIGCSE (1) (2022)
Diem-Trang Pham, Vinhthuy Phan
Representing bacteria with unique genomic signatures. Frontiers Big Data 5 (2022)
Eric Hicks, Amy Cook, Kriangsiri Malasri, Alina Zaman, Vinhthuy Phan
Keep It Relevant! Using In-class Exercises to Predict Weekly Performance in CS1. SIGCSE (1) (2022)
Eric Hicks, Quang Tran, Kriangsiri Malasri, Nam Sy Vo, Vinhthuy Phan
Active Learning: The Almost Silver Bullet. KSE (2020)
Quang Tran, Nam Sy Vo, Eric Hicks, Tin Chi Nguyen, Vinhthuy Phan
Analysis of Short-read Aligners using Genome Sequence Complexity. KSE (2020)
Vinhthuy Phan, Diem-Trang Pham, Caroline Melton, Adam J. Ramsey, Bernie J. Daigle Jr., Jennifer R. Mandel
icHET: interactive visualization of cytoplasmic heteroplasmy. Bioinform. 35 (21) (2019)
Vinhthuy Phan, Eric Hicks
Code4Brownies: an active learning solution for teaching programming and problem solving in the classroom. ITiCSE (2018)
Nam S. Vo, Vinhthuy Phan
Leveraging known genomic variants to improve detection of variants, especially close-by Indels. Bioinform. 34 (17) (2018)
Quang Tran, Diem-Trang Pham, Vinhthuy Phan
Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities. BMC Bioinform. 18 (14) (2017)
Diem-Trang Pham, Shanshan Gao, Vinhthuy Phan
An accurate and fast alignment-free method for profiling microbial communities. J. Bioinform. Comput. Biol. 15 (3) (2017)
Quang Tran, Shanshan Gao, Vinhthuy Phan
Analysis of optimal alignments unfolds aligners' bias in existing variant profiles. BMC Bioinform. 17 (S-13) (2016)
Shanshan Gao, Diem-Trang Pham, Vinhthuy Phan
Alignment-free methods for metagenomic profiling. BMC Bioinform. 16 (S15) (2015)
Nam S. Vo, Vinhthuy Phan
Improving variant calling by incorporating known genetic variants into read alignment. BMC Bioinform. 16 (S15) (2015)
Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S. Vo
How genome complexity can explain the difficulty of aligning reads to genomes. BMC Bioinform. 16 (S17) (2015)
Quang Tran, Shanshan Gao, Nam S. Vo, Vinhthuy Phan
A linear model for predicting performance of short-read aligners using genome complexity. BMC Bioinform. 16 (S15) (2015)
Nam S. Vo, Quang Tran, Vinhthuy Phan
An integrated approach for SNP calling based on population of genomes. BMC Bioinform. 15 (S-10) (2014)
Kevin L. O'kello, Vinhthuy Phan
Determining gene response patterns of time series gene expression data using R. BMC Bioinform. 15 (S-10) (2014)
Quang Tran, Vinhthuy Phan
Alignment of short reads to multiple genomes using hashing. BMC Bioinform. 15 (S-10) (2014)
Nam S. Vo, Vinhthuy Phan
Exploiting dependencies of pairwise comparison outcomes to predict patterns of gene response. BMC Bioinform. 15 (S-11) (2014)
Nam S. Vo, Vinhthuy Phan
Exploiting the bootstrap method to analyze patterns of gene expression. BMC Bioinform. 15 (S-10) (2014)
Nam S. Vo, Vinhthuy Phan
Using partially ordered sets to represent and predict true patterns of gene response to treatments. BMC Bioinform. 14 (S-17) (2013)
Nam S. Vo, Quang Tran, Nobal B. Niraula, Vinhthuy Phan
A randomized algorithm for aligning DNA sequences to reference genomes. ICCABS (2013)
Nam S. Vo, Vinhthuy Phan
Exploiting Dependencies of Patterns in Gene Expression Analysis Using Pairwise Comparisons. ISBRA (2013)
Nam S. Vo, Vinhthuy Phan
: a web-based tool for analyzing response patterns in low-replication, many-treatment gene expression data. BCB (2012)
Nam S. Vo, Vinhthuy Phan, Thomas R. Sutter
Predicting possible directed-graph patterns of gene expressions in studies involving multiple treatments. BCB (2012)
Sujoy Roy, Kevin Heinrich, Vinhthuy Phan, Michael W. Berry, Ramin Homayouni
Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets. BMC Bioinform. 12 (S-10) (2011)
Max H. Garzon, Kiran C. Bobba, Andrew Neel, Vinhthuy Phan
DNA-Based Indexing. Int. J. Nanotechnol. Mol. Comput. 2 (3) (2010)
Vinhthuy Phan, Allen Thomas, Kriangsiri Malasri, Carrie Hayes Sutter
Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases. Int. J. Bioinform. Res. Appl. 6 (1) (2010)
Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong
Synthetic gene design with a large number of hidden stops. Int. J. Data Min. Bioinform. 4 (4) (2010)
Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Shirlean Goodwin, Sridevi Bodreddigari, Thomas R. Sutter
Analyzing microarray Data with Transitive Directed Acyclic Graphs. J. Bioinform. Comput. Biol. 7 (1) (2009)
Vinhthuy Phan
Motif Tool Manager: a web-based platform for motif discovery. BMC Bioinform. 10 (S-7) (2009)
Max H. Garzon, Vinhthuy Phan, Andrew Neel
Optimal DNA Codes for Computing and Self-Assembly. Int. J. Nanotechnol. Mol. Comput. 1 (1) (2009)
Vinhthuy Phan, Nicholas A. Furlotte
Motif Tool Manager: a web-based framework for motif discovery. Bioinform. 24 (24) (2008)
Vinhthuy Phan, Sudip Saha, Ashutosh Pandey, Tit-Yee Wong
Synthetic Gene Design with a Large Number of Hidden Stop Codons. BIBM (2008)
Vinhthuy Phan, E. Olusegun George, Quynh T. Tran, Thomas R. Sutter
Toward a Combinatorial Approach to the Sample Size Problem in Multiple-treatment Microarray Studies. BIOCOMP (2008)
Vinhthuy Phan, Kriangsiri Malasri
BioTDMS: a general-purpose system for integrative management of bioinformatics tools and data. Int. J. Comput. Biol. Drug Des. 1 (2) (2008)