Wout Bittremieux

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 11

Top Topics

Feature Representations

Mass Spectrometry

Frequent Subgraph Mining

Subgraph Mining

Top Venues

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Issar Arab, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat, Wout Bittremieux
Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction. J. Chem. Inf. Model. 64 (7) (2024)
Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing
SpecHD: Hyperdimensional Computing Framework for FPGA-Based Mass Spectrometry Clustering. DATE (2024)
Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman
The pitfalls of negative data bias for the T-cell epitope specificity challenge. Nat. Mac. Intell. 5 (10) (2023)
Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing
SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering. CoRR (2023)
Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble
De novo mass spectrometry peptide sequencing with a transformer model. ICML (2022)
Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. PACT (2022)
Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. CoRR (2022)
Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. Briefings Bioinform. 22 (4) (2021)
Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (5) (2019)
Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens
Grasping frequent subgraph mining for bioinformatics applications. BioData Min. 11 (1) (2018)
Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens
A primer to frequent itemset mining for bioinformatics. Briefings Bioinform. 16 (2) (2015)