GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.
Oana UrsuNathan BoleyMaryna TaranovaY. X. Rachel WangGalip Gürkan YardimciWilliam Stafford NobleAnshul KundajePublished in: Bioinform. (2018)
Keyphrases
- random walk
- protein structure
- contact map
- directed graph
- maximum clique
- spectral methods
- protein structure alignment
- average degree
- markov chain
- amino acids
- web graph
- link prediction
- protein sequences
- graph structure
- contact maps
- nodes of a graph
- protein folding
- protein structure prediction
- markov random walk
- graph structures
- graph partitioning
- secondary structure
- weighted graph
- bipartite graph
- amino acid sequences
- fine grained
- search algorithm
- undirected graph