Layla Oesper

Publication Activity (10 Years)

Years Active: 2011-2023
Publications (10 Years): 14

Top Topics

Distance Measure

Top Venues

Publications

Ziyun Guang, Matthew Smith-Erb, Layla Oesper
A weighted distance-based approach for deriving consensus tumor evolutionary trees. Bioinform. 39 (Supplement-1) (2023)
Quoc Nguyen, Layla Oesper
Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption. BCB (2023)
Kiya Govek, Camden Sikes, Yangqiaoyu Zhou, Layla Oesper
GraPhyC: Using Consensus to Infer Tumor Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Quoc Nguyen, Layla Oesper
An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures. BIBM (2022)
Cecilia Ehrlichman, Layla Oesper
Combining Distance Measures on Tumor Evolutionary Trees. BIBM (2022)
Matthew Smith-Erb, Ziyun Guang, Layla Oesper
Deriving consensus tumor trees using integer linear programming. BIBM (2022)
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo
The evolutionary history of 2,658 cancers. Nat. 578 (7793) (2020)
Layla Oesper, Anya E. Vostinar
Expanding Undergraduate Exposure to Computer Science Subfields: Resources and Lessons from a Hands-on Computational Biology Workshop. SIGCSE (2020)
Zach Dinardo, Kiran Tomlinson, Anna M. Ritz, Layla Oesper
Distance measures for tumor evolutionary trees. Bioinform. 36 (7) (2020)
Kiya Govek, Camden Sikes, Layla Oesper
A Consensus Approach to Infer Tumor Evolutionary Histories. BCB (2018)
Kiran Tomlinson, Layla Oesper
Examining Tumor Phylogeny Inference in Noisy Sequencing Data. BIBM (2018)
Layla Oesper, Simone Dantas, Benjamin J. Raphael
Identifying simultaneous rearrangements in cancer genomes. Bioinform. 34 (2) (2018)
Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael
Multi-State Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. CoRR (2016)
Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael
Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. RECOMB (2016)
Mohammed El-Kebir, Layla Oesper, Hannah Acheson-Field, Benjamin J. Raphael
Reconstruction of clonal trees and tumor composition from multi-sample sequencing data. Bioinform. 31 (12) (2015)
Layla Oesper, Gryte Satas, Benjamin J. Raphael
Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data. Bioinform. 30 (24) (2014)
Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael
Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data. RECOMB (2013)
Layla Oesper, Benjamin J. Raphael
Workshop: Reconstructing the organization of cancer genomes. ICCABS (2013)
Layla Oesper, Anna M. Ritz, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael
Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinform. 13 (S-6) (2012)
Layla Oesper, Daniele Merico, Ruth Isserlin, Gary D. Bader
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks. Source Code Biol. Medicine 6 (2011)