Pratul K. Agarwal

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 1

Top Topics

Molecular Dynamics Simulations

Heterogeneous Environments

Top Venues

Concurr. Comput. Pract. Exp.

Pacific Symposium on Biocomputing

Publications

Pratul K. Agarwal, Thomas J. Naughton, Byung H. Park, David E. Bernholdt, Joshua Hursey, Al Geist
Application health monitoring for extreme-scale resiliency using cooperative fault management. Concurr. Comput. Pract. Exp. 32 (2) (2020)
Pratul K. Agarwal, Scott S. Hampton, Jeffrey D. Poznanovic, Arvind Ramanathan, Sadaf R. Alam, Paul S. Crozier
Performance modeling of microsecond scale biological molecular dynamics simulations on heterogeneous architectures. Concurr. Comput. Pract. Exp. 25 (10) (2013)
Virginia M. Burger, Arvind Ramanathan, Andrej J. Savol, Christopher B. Stanley, Pratul K. Agarwal, Chakra Chennubhotla
Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain Ensemble. Pacific Symposium on Biocomputing (2012)
Andrej J. Savol, Virginia M. Burger, Pratul K. Agarwal, Arvind Ramanathan, Chakra Chennubhotla
QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin. Bioinform. 27 (13) (2011)
Byung H. Park, Thomas J. Naughton, Pratul K. Agarwal, David E. Bernholdt, Al Geist, Jennifer L. Tippens
Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation. POLICY (2011)
Ananth Nallamuthu, Melissa C. Smith, Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam
Energy efficient biomolecular simulations with FPGA-based reconfigurable computing. Conf. Computing Frontiers (2010)
Scott S. Hampton, Sadaf R. Alam, Paul S. Crozier, Pratul K. Agarwal
Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations. SC (2010)
Scott S. Hampton, Pratul K. Agarwal, Sadaf R. Alam, Paul S. Crozier
Towards microsecond biological molecular dynamics simulations on hybrid processors. HPCS (2010)
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher James Langmead
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. J. Comput. Biol. 17 (3) (2010)
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher James Langmead
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. RECOMB (2009)
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong
Experimental Evaluation of Molecular Dynamics Simulations on Multi-core Systems. HiPC (2008)
Sadaf R. Alam, Pratul K. Agarwal, Scott S. Hampton, Hong Ong, Jeffrey S. Vetter
Impact of multicores on large-scale molecular dynamics simulations. IPDPS (2008)
Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter
Performance characteristics of biomolecular simulations on high-end systems with multi-core processors. Parallel Comput. 34 (11) (2008)
Sadaf R. Alam, Pratul K. Agarwal, Melissa C. Smith, Jeffrey S. Vetter, David Caliga
Using FPGA Devices to Accelerate Biomolecular Simulations. Computer 40 (3) (2007)
Sadaf R. Alam, Pratul K. Agarwal, Jeffrey S. Vetter, Melissa C. Smith
Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable Computing. Scalable Comput. Pract. Exp. 8 (4) (2007)
Sadaf R. Alam, Pratul K. Agarwal
On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors. IPDPS (2007)
Sadaf R. Alam, Pratul K. Agarwal, Jeffery A. Kuehn
Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel System. BIBE (2007)
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwal, Al Geist
Performance characterization of molecular dynamics techniques for biomolecular simulations. PPOPP (2006)