Ryan H. Lilien

Publication Activity (10 Years)

Years Active: 1996-2012
Publications (10 Years): 0

Top Topics

Path Planning Algorithm

Top Venues

J. Chem. Inf. Model.

Publications

Maria Safi, Ryan H. Lilien
Efficient a Priori Identification of Drug Resistant Mutations Using Dead-End Elimination and MM-PBSA. J. Chem. Inf. Model. 52 (6) (2012)
Izhar Wallach, Ryan H. Lilien
Virtual Decoy Sets for Molecular Docking Benchmarks. J. Chem. Inf. Model. 51 (2) (2011)
Matthew D. Segall, Edmund J. Champness, Chris Leeding, Ryan H. Lilien, Ramgopal R. Mettu, Brian W. Stevens
Applying Medicinal Chemistry Transformations and Multiparameter Optimization to Guide the Search for High-Quality Leads and Candidates. J. Chem. Inf. Model. 51 (11) (2011)
Izhar Wallach, Navdeep Jaitly, Kong T. Nguyen, Matthieu Schapira, Ryan H. Lilien
Normalizing Molecular Docking Rankings using Virtually Generated Decoys. J. Chem. Inf. Model. 51 (8) (2011)
Navdeep Jaitly, Marcus A. Brubaker, John L. Rubinstein, Ryan H. Lilien
A Bayesian method for 3D macromolecular structure inference using class average images from single particle electron microscopy. Bioinform. 26 (19) (2010)
Maria Safi, Ryan H. Lilien
Restricted dead-end elimination: Protein redesign with a bounded number of residue mutations. J. Comput. Chem. 31 (6) (2010)
Izhar Wallach, Ryan H. Lilien
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding. Bioinform. 25 (5) (2009)
Izhar Wallach, Ryan H. Lilien
Predicting Multiple Ligand Binding Modes Using Self-Consistent Pharmacophore Hypotheses. J. Chem. Inf. Model. 49 (9) (2009)
Izhar Wallach, Ryan H. Lilien
Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation. Bioinform. 25 (12) (2009)
Clifton Forlines, Ryan H. Lilien
Adapting a single-user, single-display molecular visualization application for use in a multi-user, multi-display environment. AVI (2008)
Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles. J. Comput. Chem. 29 (10) (2008)
Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. ISMB (Supplement of Bioinformatics) (2006)
Ivelin Georgiev, Ryan H. Lilien, Bruce Randall Donald
A Novel Minimized Dead-End Elimination Criterion and Its Application to Protein Redesign in a Hybrid Scoring and Search Algorithm for Computing Partition Functions over Molecular Ensembles. RECOMB (2006)
Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald
High-throughput inference of protein-protein interfaces from unassigned NMR data. ISMB (Supplement of Bioinformatics) (2005)
Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald
A Novel Ensemble-Based Scoring and Search Algorithm for Protein Redesign and Its Application to Modify the Substrate Specificity of the Gramicidin Synthetase A Phenylalanine Adenylation Enzyme. J. Comput. Biol. 12 (6) (2005)
Ryan H. Lilien, Brian W. Stevens, Amy C. Anderson, Bruce Randall Donald
A novel ensemble-based scoring and search algorithm for protein redesign, and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme. RECOMB (2004)
Richard E. Gillilan, Ryan H. Lilien
Optimization and dynamics of protein-protein complexes using B-splines. J. Comput. Chem. 25 (13) (2004)
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. J. Comput. Biol. 11 (2/3) (2004)
Ryan H. Lilien, Hany Farid, Bruce Randall Donald
Probabilistic Disease Classification of Expression-Dependent Proteomic Data from Mass Spectrometry of Human Serum. J. Comput. Biol. 10 (6) (2003)
Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB (2003)
Lincong Wang, Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald
An Exact Algorithm For Determining Protein Backbone Structure From NH Residual Dipolar Couplings. CSB (2003)
Bruce Randall Donald, Christopher Bailey-Kellogg, Jack Kelley, Ryan H. Lilien
Physical Geometric Algorithms for Structural Molecular Biology. ICRA (2001)
Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson
View-Based Recognition Using an Eigenspace Approximation to the Hausdorff Measure. IEEE Trans. Pattern Anal. Mach. Intell. 21 (9) (1999)
Daniel P. Huttenlocher, Ryan H. Lilien, Clark F. Olson
Object Recognition Using Subspace Methods. ECCV (1) (1996)