Judith Klein-Seetharaman

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 7

Top Topics

Chemical Engineering

Video Recordings

Expert Opinions

Diabetes Mellitus

Top Venues

J. Comput. Biol.

Int. J. Parallel Emergent Distributed Syst.

IEEE Trans. Educ.

Publications

Abdullah Mamun, Chia-Cheng Kuo, David W. Britt, Lawrence D. Devoe, Mark I. Evans, Hassan Ghasemzadeh, Judith Klein-Seetharaman
Neonatal Risk Modeling and Prediction. BSN (2023)
Abraham Asfaw, Alexandre Blais, Kenneth R. Brown, Jonathan Candelaria, Christopher Cantwell, Lincoln D. Carr, Joshua Combes, Dripto M. Debroy, John M. Donohue, Sophia E. Economou, Emily Edwards, Michael F. J. Fox, Steven M. Girvin, Alan Ho, Hilary M. Hurst, Zubin Jacob, Blake R. Johnson, Ezekiel Johnston-Halperin, Robert Joynt, Eliot Kapit, Judith Klein-Seetharaman, Martin Laforest, H. J. Lewandowski, Theresa W. Lynn, Corey Rae H. McRae, Celia Merzbacher, Spyridon Michalakis, Prineha Narang, William D. Oliver, Jens Palsberg, David P. Pappas, Michael G. Raymer, David J. Reilly, Mark Saffman, Thomas A. Searles, Jeffrey H. Shapiro, Chandralekha Singh
Building a Quantum Engineering Undergraduate Program. IEEE Trans. Educ. 65 (2) (2022)
Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. PSB (2021)
Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam
Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience. PSB (2021)
Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. J. Comput. Biol. 24 (6) (2017)
Narinder Sanghera, Alexander Anderson, Nick Nuar, Can Xie, Daniel Mitchell, Judith Klein-Seetharaman
Insulin biosensor development: a case study. Int. J. Parallel Emergent Distributed Syst. 32 (1) (2017)
Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. RECOMB (2016)
Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
Refining Literature Curated Protein Interactions Using Expert Opinions. Pacific Symposium on Biocomputing (2015)
Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
Multitask learning for host-pathogen protein interactions. Bioinform. 29 (13) (2013)
Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
Techniques to cope with missing data in host-pathogen protein interaction prediction. Bioinform. 28 (18) (2012)
Javier García-García, Sylvia Schleker, Judith Klein-Seetharaman, Baldo Oliva
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Nevenka Dimitrova, Judith Klein-Seetharaman, Peter Beyerlein, Ahmed H. Tewfik
Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]. IEEE Signal Process. Mag. 29 (1) (2012)
Ilia Nouretdinov, Alex J. Gammerman, Yanjun Qi, Judith Klein-Seetharaman
Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method. Pacific Symposium on Biocomputing (2012)
Zhongming Zhao, Junfeng Xia, Oznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
Virus interactions with human signal transduction pathways. Int. J. Comput. Biol. Drug Des. 4 (1) (2011)
Subhodeep Moitra, Naveena Yanamala, Oznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE (2010)
Yanjun Qi, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinform. 26 (18) (2010)
Irtisha Singh, Oznur Tastan, Judith Klein-Seetharaman
Comparison of virus interactions with human signal transduction pathways. BCB (2010)
Sivaraman Balakrishnan, Oznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. GENSiPS (2009)
Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration. Pacific Symposium on Biocomputing (2009)
Naveena Yanamala, Kalyan C. Tirupula, Judith Klein-Seetharaman
Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors. BMC Bioinform. 9 (S-1) (2008)
Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
Protein complex identification by supervised graph local clustering. ISMB (2008)
Madhavi Ganapathiraju, Narayanaswamy Balakrishnan, Raj Reddy, Judith Klein-Seetharaman
Transmembrane helix prediction using amino acid property features and latent semantic analysis. BMC Bioinform. 9 (S-1) (2008)
Madhavi Ganapathiraju, Christopher Jon Jursa, Hassan A. Karimi, Judith Klein-Seetharaman
TMpro web server and web service: transmembrane helix prediction through amino acid property analysis. Bioinform. 23 (20) (2007)
Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph
A mixture of feature experts approach for protein-protein interaction prediction. BMC Bioinform. 8 (S-10) (2007)
Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman
BioSim--a biomedical character-based problem solving environment. Future Gener. Comput. Syst. 21 (7) (2005)
Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph
Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources. Pacific Symposium on Biocomputing (2005)
Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman
A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries. ISMIS (2005)
Yang Cai, Judith Klein-Seetharaman
Ambient intelligence for scientific discovery. CHI Extended Abstracts (2004)
Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman
Computational Biology and Language. Ambient Intelligence for Scientific Discovery (2004)
Deborah K. Weisser, Judith Klein-Seetharaman
Identification of fundamental building blocks in protein sequences using statistical association measures. SAC (2004)
Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan
Comparison of probabilistic combination methods for protein secondary structure prediction. Bioinform. 20 (17) (2004)
Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan
Context sensitive vocabulary and its application in protein secondary structure prediction. SIGIR (2004)
Madhavi K. Ganapathiraju, Judith Klein-Seetharaman, Narayanaswamy Balakrishnan, Raj Reddy
Characterization of protein secondary structure. IEEE Signal Process. Mag. 21 (3) (2004)
Yang Cai, Ingo Snel, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman
Towards Biomedical Problem Solving in a Game Environment. International Conference on Computational Science (2003)