Wei Peng

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 32

Top Topics

Biological Networks

Gene Expression

Relational Graph

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Wei Peng, Jiangzhen Lin, Wei Dai, Gong Chen, Xiaodong Fu, Li Liu, Lijun Liu
Hypergraph Representation Learning for Cancer Drug Response Prediction. ISBRA (2) (2024)
Wei Lan, Guohang He, Mingyang Liu, Qingfeng Chen, Junyue Cao, Wei Peng
Transformer-based Single-Cell Language Model: A Survey. CoRR (2024)
Wei Peng, Zhengnan Zhou, Wei Dai, Ning Yu, Jianxin Wang
Multi-Network Graph Contrastive Learning for Cancer Driver Gene Identification. IEEE Trans. Netw. Sci. Eng. 11 (4) (2024)
Wei Peng, Zhengnan Zhou, Wei Dai, Xinping Xu, Xiaodong Fu, Li Liu, Lijun Liu
DGCL: A Contrastive Learning Method for Predicting Cancer Driver Genes Based on Graph Diffusion. ISBRA (2) (2024)
Wei Peng, Chuyue Chen, Wei Dai
Patient Anticancer Drug Response Prediction Based on Single-Cell Deconvolution. ISBRA (3) (2024)
Fangxu Chen, Wei Peng, Wei Dai, Shoulin Wei, Xiaodong Fu, Li Liu, Lijun Liu
Supervised graph contrastive learning for cancer subtype identification through multi-omics data integration. Health Inf. Sci. Syst. 12 (1) (2024)
Wei Peng, Zhihao Zhang, Wei Dai, Xiaodong Fu, Li Liu, Lijun Liu, Ning Yu
A multi-view comparative learning method for spatial transcriptomics data clustering. BIBM (2023)
Wei Peng, Zicheng Che, Wei Dai, Shoulin Wei, Wei Lan
Predicting miRNA-Disease Associations From miRNA-Gene-Disease Heterogeneous Network With Multi-Relational Graph Convolutional Network Model. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Kaiqi Wang, Li Liu, Xiaodong Fu, Lijun Liu, Wei Peng
RA-DENet: Reverse Attention and Distractions Elimination Network for polyp segmentation. Comput. Biol. Medicine 155 (2023)
Wei Peng, Tielin Chen, Hancheng Liu, Wei Dai, Ning Yu, Wei Lan
Improving drug response prediction based on two-space graph convolution. Comput. Biol. Medicine 158 (2023)
Juncheng Pu, Li Liu, Xiaodong Fu, Zhuo Su, Lijun Liu, Wei Peng
Feature Representation for High-resolution Clothed Human Reconstruction. Comput. Graph. Forum 42 (6) (2023)
Wei Peng, Ming Liu, Wei Dai, Tielin Chen, Yu Fu, Yi Pan
Multi-View Feature Aggregation for Predicting Microbe-Disease Association. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Wei Peng, Rong Wu, Wei Dai, Ning Yu
Identifying cancer driver genes based on multi-view heterogeneous graph convolutional network and self-attention mechanism. BMC Bioinform. 24 (1) (2023)
Yong Wei, Li Liu, Xiaodong Fu, Lijun Liu, Wei Peng
Crowded pose-guided multi-task learning for instance-level human parsing. Mach. Vis. Appl. 34 (3) (2023)
Wei Lan, Ximin Wu, Qingfeng Chen, Wei Peng, Jianxin Wang, Yi-Ping Phoebe Chen
GANLDA: Graph attention network for lncRNA-disease associations prediction. Neurocomputing 469 (2022)
Wei Peng, Hancheng Liu, Wei Dai, Ning Yu, Jianxin Wang
Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions. Bioinform. 38 (19) (2022)
Junrong Song, Wei Peng, Feng Wang
Identifying Cancer Patient Subgroups by Finding Co-Modules From the Driver Mutation Profiles and Downstream Gene Expression Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (5) (2022)
Wei Peng, Tielin Chen, Wei Dai
Predicting Drug Response Based on Multi-Omics Fusion and Graph Convolution. IEEE J. Biomed. Health Informatics 26 (3) (2022)
Wei Lan, Mingrui Zhu, Qingfeng Chen, Jianwei Chen, Jin Ye, Jin Liu, Wei Peng, Shirui Pan
Prediction of circRNA-miRNA Associations Based on Network Embedding. Complex. 2021 (2021)
Zicheng Che, Wei Peng, Wei Dai, Shoulin Wei, Wei Lan
A Heterogeneous Graph Convolutional Network-Based Deep Learning Model to Identify miRNA-Disease Association. ISBRA (2021)
Wei Dai, Bingxi Chen, Wei Peng, Xia Li, Jiancheng Zhong, Jianxin Wang
A Novel Multi-Ensemble Method for Identifying Essential Proteins. J. Comput. Biol. 28 (7) (2021)
Jiancheng Zhong, Chao Tang, Wei Peng, Minzhu Xie, Yusui Sun, Qiang Tang, Qiu Xiao, Jiahong Yang
A novel essential protein identification method based on PPI networks and gene expression data. BMC Bioinform. 22 (1) (2021)
Jiancheng Zhong, Yusui Sun, Minzhu Xie, Wei Peng, Chushu Zhang, Fang-Xiang Wu, Jianxin Wang
Proteoform characterization based on top-down mass spectrometry. Briefings Bioinform. 22 (2) (2021)
Ximin Wu, Wei Lan, Qingfeng Chen, Yi Dong, Jin Liu, Wei Peng
Inferring LncRNA-disease associations based on graph autoencoder matrix completion. Comput. Biol. Chem. 87 (2020)
Wei Peng, Jielin Du, Lun Li, Wei Dai, Wei Lan
Predicting protein functions by using non-negative matrix factorisation with multi-networks co-regularisation. Int. J. Data Min. Bioinform. 23 (4) (2020)
Wei Dai, Qi Chang, Wei Peng, Jiancheng Zhong, Yongjiang Li
Identifying Human Essential Genes by Network Embedding Protein-Protein Interaction Network. ISBRA (2019)
Wei Dai, Xia Li, Wei Peng, Jurong Song, Jiancheng Zhong, Jianxin Wang
Improving Identification of Essential Proteins by a Novel Ensemble Method. ISBRA (2019)
Wei Peng, Lun Li, Wei Dai, Jielin Du, Wei Lan
Predicting protein functions through non-negative matrix factorization regularized by protein-protein interaction network and gene functional information. BIBM (2019)
Wei Peng, Min Li, Lu Chen, Lusheng Wang
Predicting Protein Functions by Using Unbalanced Random Walk Algorithm on Three Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Xiaoqing Peng, Jianxin Wang, Wei Peng, Fang-Xiang Wu, Yi Pan
Protein-protein interactions: detection, reliability assessment and applications. Briefings Bioinform. 18 (5) (2017)
Wei Peng, Wei Lan, Zeng Yu, Jianxin Wang, Yi Pan
Predicting MicroRNA-Disease Associations by Random Walking on Multiple Networks. ISBRA (2016)
Wei Peng, Wei Lan, Jianxin Wang, Yi Pan
Predicting microRNA-disease associations by walking on four biological networks. BIBM (2016)
Wei Peng, Jianxin Wang, Bihai Zhao, Lusheng Wang
Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (1) (2015)
Wei Peng, Jianxin Wang, Fang-Xiang Wu, Yi Pan
Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison. Algorithms Mol. Biol. 10 (2015)
Wei Peng, Jianxin Wang, Yingjiao Cheng, Yu Lu, Fang-Xiang Wu, Yi Pan
UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Wei Peng, Jianxin Wang, Juan Cai, Lu Chen, Min Li, Fang-Xiang Wu
Improving protein function prediction using domain and protein complexes in PPI networks. BMC Syst. Biol. 8 (2014)
Jianxin Wang, Wei Peng, Yingjiao Chen, Yu Lu, Yi Pan
Identifying essential proteins based on protein domains in protein-protein interaction networks. BIBM (2013)
Wei Peng, Jianxin Wang, Fang-Xiang Wu
A dividing-and-matching algorithm to detect conserved protein complexes via local network alignment. BIBM (2013)
Wei Peng, Jianxin Wang, Weiping Wang, Qing Liu, Fang-Xiang Wu, Yi Pan
Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. BMC Syst. Biol. 6 (2012)