Lachlan J. M. Coin

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 14

Top Topics

Rna Secondary Structure Prediction

Escherichia Coli

Top Venues

Briefings Bioinform.

IEEE J. Biomed. Health Informatics

Publications

Cong Wang, Zhijie He, Runchang Jia, Shirui Pan, Lachlan J. M. Coin, Jiangning Song, Fuyi Li
PLANNER: A Multi-Scale Deep Language Model for the Origins of Replication Site Prediction. IEEE J. Biomed. Health Informatics 28 (4) (2024)
Fuyi Li, Xudong Guo, Yue Bi, Runchang Jia, Miranda E. Pitt, Shirui Pan, Shuqin Li, Robin B. Gasser, Lachlan J. M. Coin, Jiangning Song
Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins. Comput. Biol. Medicine 163 (2023)
Yan Zhu, Fuyi Li, Xudong Guo, Xiaoyu Wang, Lachlan J. M. Coin, Geoffrey I. Webb, Jiangning Song, Cangzhi Jia
TIMER is a Siamese neural network-based framework for identifying both general and species-specific bacterial promoters. Briefings Bioinform. 24 (4) (2023)
Ruyi Chen, Fuyi Li, Xudong Guo, Yue Bi, Chen Li, Shirui Pan, Lachlan J. M. Coin, Jiangning Song
ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species. Briefings Bioinform. 24 (3) (2023)
Eike Steinig, Lachlan J. M. Coin
Nanoq: ultra-fast quality control for nanopore reads. J. Open Source Softw. 7 (69) (2022)
Meng Zhang, Cangzhi Jia, Fuyi Li, Chen Li, Yan Zhu, Tatsuya Akutsu, Geoffrey I. Webb, Quan Zou, Lachlan J. M. Coin, Jiangning Song
Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction. Briefings Bioinform. 23 (2) (2022)
Fuyi Li, Shuangyu Dong, André Leier, Meiya Han, Xudong Guo, Jing Xu, Xiaoyu Wang, Shirui Pan, Cangzhi Jia, Yang Zhang, Geoffrey I. Webb, Lachlan J. M. Coin, Chen Li, Jiangning Song
Positive-unlabeled learning in bioinformatics and computational biology: a brief review. Briefings Bioinform. 23 (1) (2022)
Quanzhong Liu, Honglin Fang, Xiao Wang, Miao Wang, Shuqin Li, Lachlan J. M. Coin, Fuyi Li, Jiangning Song
DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions. Bioinform. 38 (17) (2022)
Fuyi Li, Xudong Guo, Peipei Jin, Jinxiang Chen, Dongxu Xiang, Jiangning Song, Lachlan J. M. Coin
Porpoise: a new approach for accurate prediction of RNA pseudouridine sites. Briefings Bioinform. 22 (6) (2021)
Son Hoang Nguyen, Minh Duc Cao, Lachlan J. M. Coin
Real-time resolution of short-read assembly graph using ONT long reads. PLoS Comput. Biol. 17 (1) (2021)
Haojing Shao, Devika Ganesamoorthy, Tania P. S. Duarte, Minh Duc Cao, Clive J. Hoggart, Lachlan J. M. Coin
npInv: accurate detection and genotyping of inversions using long read sub-alignment. BMC Bioinform. 19 (1) (2018)
Minh Duc Cao, Devika Ganesamoorthy, Chenxi Zhou, Lachlan J. M. Coin
Simulating the dynamics of targeted capture sequencing with CapSim. Bioinform. 34 (5) (2018)
Son Hoang Nguyen, Tania P. S. Duarte, Lachlan J. M. Coin, Minh Duc Cao
Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode. Bioinform. 33 (24) (2017)
Minh Duc Cao, Devika Ganesamoorthy, Matthew A. Cooper, Lachlan J. M. Coin
Realtime analysis and visualization of MinION sequencing data with npReader. Bioinform. 32 (5) (2016)
Evangelos Bellos, Lachlan J. M. Coin
cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data. Bioinform. 30 (17) (2014)
Hariklia Eleftherohorinou, Johanna C. Andersson-Assarsson, Robin G. Walters, Julia S. El-Sayed Moustafa, Lachlan J. M. Coin, Peter Jacobson, Lena M. S. Carlsson, Alexandra I. F. Blakemore, Philippe Froguel, Andrew J. Walley, Mario Falchi
famCNV: copy number variant association for quantitative traits in families. Bioinform. 27 (13) (2011)
Paul F. O'Reilly, Lachlan J. M. Coin, Clive J. Hoggart
invertFREGENE: software for simulating inversions in population genetic data. Bioinform. 26 (6) (2010)
Shu-Yi Su, Julian E. Asher, Marjo-Riitta Järvelin, Philippe Froguel, Alexandra I. F. Blakemore, David J. Balding, Lachlan J. M. Coin
Inferring combined CNV/SNP haplotypes from genotype data. Bioinform. 26 (11) (2010)
Shu-Yi Su, Jonathan White, David J. Balding, Lachlan J. M. Coin
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions. BMC Bioinform. 9 (2008)
Shu-Yi Su, David J. Balding, Lachlan J. M. Coin
Disease association tests by inferring ancestral haplotypes using a hidden markov model. Bioinform. 24 (7) (2008)