James C. Whisstock

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 5

Top Topics

Physicochemical Properties

Previously Identified

Transfer Learning

Secondary Structure

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Charles Bayly-Jones, James C. Whisstock
Mining folded proteomes in the era of accurate structure prediction. PLoS Comput. Biol. 18 (3) (2022)
David Dierickx, Patrick Cleeve, Sergey Gorelick, James C. Whisstock, Alex De Marco
Juno: a Python-based graphical package for optical system design. CoRR (2022)
Ying Xu, Campbell Wilson, André Leier, Tatiana T. Marquez-Lago, James C. Whisstock, Jiangning Song
PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy. PAKDD (2) (2020)
Ying Xu, André Leier, Tatiana T. Marquez-Lago, Jue Xie, Antonio Jimeno-Yepes, James C. Whisstock, Campbell Wilson, Jiangning Song
Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning. AMIA (2020)
Fuyi Li, Yanan Wang, Chen Li, Tatiana T. Marquez-Lago, André Leier, Neil D. Rawlings, Gholamreza Haffari, Jerico Nico De Leon Revote, Tatsuya Akutsu, Kuo-Chen Chou, Anthony W. Purcell, Robert N. Pike, Geoffrey I. Webb, Alexander Ian Smith, Trevor Lithgow, Roger J. Daly, James C. Whisstock, Jiangning Song
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods. Briefings Bioinform. 20 (6) (2019)
Fuyi Li, Chen Li, Mingjun Wang, Geoffrey I. Webb, Yang Zhang, James C. Whisstock, Jiangning Song
GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome. Bioinform. 31 (9) (2015)
Cyril F. Reboul, James C. Whisstock, Michelle A. Dunstone
A New Model for Pore Formation by Cholesterol-Dependent Cytolysins. PLoS Comput. Biol. 10 (8) (2014)
Mingjun Wang, Xing-Ming Zhao, Hao Tan, Tatsuya Akutsu, James C. Whisstock, Jiangning Song
Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets. Bioinform. 30 (1) (2014)
Cyril F. Reboul, Khalid Mahmood, James C. Whisstock, Michelle A. Dunstone
Predicting giant transmembrane β-barrel architecture. Bioinform. 28 (10) (2012)
Alex D. Stivala, Michael Wybrow, Anthony Wirth, James C. Whisstock, Peter J. Stuckey
Automatic generation of protein structure cartoons with Pro-origami. Bioinform. 27 (23) (2011)
Jiangning Song, Hao Tan, Sarah E. Boyd, Hong-Bin Shen, Khalid Mahmood, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock, Robert N. Pike
Bioinformatic Approaches for Predicting substrates of Proteases. J. Bioinform. Comput. Biol. 9 (1) (2011)
Jiangning Song, Hao Tan, Hong-Bin Shen, Khalid Mahmood, Sarah E. Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock
Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Bioinform. 26 (6) (2010)
Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. Bioinform. 26 (17) (2010)
Jason W. Schmidberger, Blair Bethwaite, Colin Enticott, Mark A. Bate, Steve G. Androulakis, Noel G. Faux, Cyril F. Reboul, Jennifer M. N. Phan, James C. Whisstock, Wojtek Goscinski, Slavisa Garic, David Abramson, Ashley M. Buckle
High-throughput protein structure determination using grid computing. IPDPS (2009)
Noel G. Faux, Anthony Beitz, Mark A. Bate, Abdullah A. Amin, Ian Atkinson, Colin Enticott, Khalid Mahmood, Matthew Swift, Andrew E. Treloar, David Abramson, James C. Whisstock, Ashley M. Buckle
eResearch Solutions for High Throughput Structural Biology. eScience (2007)
Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, Ashley M. Buckle
The REFOLD database: a tool for the optimization of protein expression and refolding. Nucleic Acids Res. 34 (Database-Issue) (2006)
Sarah E. Boyd, Robert N. Pike, George B. Rudy, James C. Whisstock, Maria J. García de la Banda
Pops: a Computational Tool for Modeling and Predicting Protease Specificity. J. Bioinform. Comput. Biol. 3 (3) (2005)
Arun Siddharth Konagurthu, James C. Whisstock, Peter J. Stuckey
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs. J. Bioinform. Comput. Biol. 2 (4) (2004)
Sarah E. Boyd, Maria J. García de la Banda, Robert N. Pike, James C. Whisstock, George B. Rudy
PoPS: A Computational Tool for Modeling and Predicting Protease Specificity. CSB (2004)