Arun Siddharth Konagurthu

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 12

Top Topics

Parametric Curves

Protein Structural

Statistical Models

Top Venues

Publications

Piyumi R. Amarasinghe, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arthur M. Lesk, Arun Siddharth Konagurthu
Getting 'ϕψχal' with proteins: minimum message length inference of joint distributions of backbone and sidechain dihedral angles. Bioinform. 39 (Supplement-1) (2023)
Sandun Rajapaksa, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu
The divergence time of protein structures modelled by Markov matrices and its relation to the divergence of sequences. CoRR (2023)
Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt
On Universal Codes for Integers: Wallace Tree, Elias Omega and Beyond. DCC (2021)
Sandun Rajapaksa, Dinithi Sumanaweera, Maria Garcia de la Banda, Peter J. Stuckey, David Abramson, Lloyd Allison, Arthur M. Lesk, Arun Siddharth Konagurthu
On identifying statistical redundancy at the level of amino acid subsequences. BIBM (2021)
Arthur M. Lesk, Arun Siddharth Konagurthu
Neighbourhoods in the yeast regulatory network in different physiological states. Bioinform. 37 (4) (2021)
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
Bridging the Gaps in Statistical Models of Protein Alignment. CoRR (2020)
Lloyd Allison, Arun Siddharth Konagurthu, Daniel F. Schmidt
On Universal Codes for Integers: Wallace Tree, Elias Omega and Variations. CoRR (2019)
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors. Bioinform. 35 (14) (2019)
Dinithi Sumanaweera, Lloyd Allison, Arun Siddharth Konagurthu
The Bits Between Proteins. DCC (2018)
Ramanan Subramanian, Lloyd Allison, Peter J. Stuckey, Maria Garcia de la Banda, David Abramson, Arthur M. Lesk, Arun Siddharth Konagurthu
Statistical Compression of Protein Folding Patterns for Inference of Recurrent Substructural Themes. DCC (2017)
James H. Collier, Lloyd Allison, Arthur M. Lesk, Peter J. Stuckey, Maria Garcia de la Banda, Arun Siddharth Konagurthu
Statistical inference of protein structural alignments using information and compression. Bioinform. 33 (7) (2017)
Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
On Sufficient Statistics of Least-Squares Superposition of Vector Sets. J. Comput. Biol. 22 (6) (2015)
Parthan Kasarapu, Maria Garcia de la Banda, Arun Siddharth Konagurthu
On Representing Protein Folding Patterns Using Non-Linear Parametric Curves. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
On Sufficient Statistics of Least-Squares Superposition of Vector Sets. RECOMB (2014)
James H. Collier, Arun Siddharth Konagurthu
An Information Measure for Comparing Top k Lists. eScience (2014)
James H. Collier, Lloyd Allison, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu
A new statistical framework to assess structural alignment quality using information compression. Bioinform. 30 (17) (2014)
Arun Siddharth Konagurthu, James H. Collier
An information measure for comparing top $k$ lists. CoRR (2013)
Arun Siddharth Konagurthu, Lloyd Allison, David Abramson, Peter J. Stuckey, Arthur M. Lesk
Statistical Inference of Protein "LEGO Bricks". ICDM (2013)
James H. Collier, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu
Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Arun Siddharth Konagurthu, Arthur M. Lesk, Lloyd Allison
Minimum message length inference of secondary structure from protein coordinate data. Bioinform. 28 (12) (2012)
Arun Siddharth Konagurthu, Lloyd Allison, Peter J. Stuckey, Arthur M. Lesk
Piecewise linear approximation of protein structures using the principle of minimum message length. Bioinform. 27 (13) (2011)
Lei Zhang, James Bailey, Arun Siddharth Konagurthu, Kotagiri Ramamohanarao
A fast indexing approach for protein structure comparison. BMC Bioinform. 11 (S-1) (2010)
Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel
Design of an Efficient Out-of-Core Read Alignment Algorithm. WABI (2010)
Khalid Mahmood, Arun Siddharth Konagurthu, Jiangning Song, Ashley M. Buckle, Geoffrey I. Webb, James C. Whisstock
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes. Bioinform. 26 (17) (2010)
Arun Siddharth Konagurthu, Arthur M. Lesk
On the origin of distribution patterns of motifs in biological networks. BMC Syst. Biol. 2 (2008)
Arun Siddharth Konagurthu, Peter J. Stuckey, Arthur M. Lesk
Structural search and retrieval using a tableau representation of protein folding patterns. Bioinform. 24 (5) (2008)
Arun Siddharth Konagurthu, Peter J. Stuckey
Optimal Sum-of-Pairs Multiple Sequence Alignment Using Incremental Carrillo and Lipman Bounds. J. Comput. Biol. 13 (3) (2006)
Arun Siddharth Konagurthu, James C. Whisstock, Peter J. Stuckey
Progressive Multiple Alignment Using Sequence Triplet Optimizations and Three-residue Exchange Costs. J. Bioinform. Comput. Biol. 2 (4) (2004)