Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors.
Dinithi SumanaweeraLloyd AllisonArun Siddharth KonagurthuPublished in: Bioinform. (2019)
Keyphrases
- finite state
- protein sequences
- finite state transducers
- statistical models
- markov chain
- multiple sequence alignment
- multiple alignment
- probabilistic model
- random fields
- model checking
- protein structure
- bayesian framework
- variational methods
- markov decision processes
- joint distribution
- secondary structure
- loopy belief propagation
- model selection
- em algorithm
- similarity measure