Jörg Rahnenführer

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 30

Top Topics

Survival Analysis

Feature Selection

Top Venues

Publications

Leonie Schürmeyer, Kirsten Schorning, Jörg Rahnenführer
Designs for the simultaneous inference of concentration-response curves. BMC Bioinform. 24 (1) (2023)
Katrin Madjar, Manuela Zucknick, Katja Ickstadt, Jörg Rahnenführer
Correction to: Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. BMC Bioinform. 23 (1) (2022)
Andrea Bommert, Thomas Welchowski, Matthias Schmid, Jörg Rahnenführer
Benchmark of filter methods for feature selection in high-dimensional gene expression survival data. Briefings Bioinform. 23 (1) (2022)
Rudolf Jagdhuber, Jörg Rahnenführer
Implications on Feature Detection When Using the Benefit-Cost Ratio. SN Comput. Sci. 2 (4) (2021)
Jonas Rieger, Carsten Jentsch, Jörg Rahnenführer
RollingLDA: An Update Algorithm of Latent Dirichlet Allocation to Construct Consistent Time Series from Textual Data. EMNLP (Findings) (2021)
Junjie Shi, Jiang Bian, Jakob Richter, Kuan-Hsun Chen, Jörg Rahnenführer, Haoyi Xiong, Jian-Jia Chen
MODES: model-based optimization on distributed embedded systems. Mach. Learn. 110 (6) (2021)
Andrea Bommert, Jörg Rahnenführer, Michel Lang
Employing an Adjusted Stability Measure for Multi-Criteria Model Fitting on Data Sets with Similar Features. CoRR (2021)
Katrin Madjar, Jörg Rahnenführer
Weighted Cox regression for the prediction of heterogeneous patient subgroups. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Andrea Bommert, Jörg Rahnenführer, Michel Lang
Employing an Adjusted Stability Measure for Multi-criteria Model Fitting on Data Sets with Similar Features. LOD (2021)
Katrin Madjar, Manuela Zucknick, Katja Ickstadt, Jörg Rahnenführer
Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. BMC Bioinform. 22 (1) (2021)
Jakob Richter, Junjie Shi, Jian-Jia Chen, Jörg Rahnenführer, Michel Lang
Model-based optimization with concept drifts. GECCO (2020)
Jonas Rieger, Jörg Rahnenführer, Carsten Jentsch
Improving Latent Dirichlet Allocation: On Reliability of the Novel Method LDAPrototype. NLDB (2020)
Rudolf Jagdhuber, Jörg Rahnenführer
Implications on Feature Detection when using the Benefit-Cost Ratio. CoRR (2020)
Andrea Bommert, Jörg Rahnenführer
Adjusted Measures for Feature Selection Stability for Data Sets with Similar Features. LOD (1) (2020)
Rudolf Jagdhuber, Michel Lang, Arnulf Stenzl, Jochen Neuhaus, Jörg Rahnenführer
Cost-Constrained feature selection in binary classification: adaptations for greedy forward selection and genetic algorithms. BMC Bioinform. 21 (1) (2020)
Rudolf Jagdhuber, Michel Lang, Jörg Rahnenführer
Feature Selection Methods for Cost-Constrained Classification in Random Forests. CoRR (2020)
Jonas Rieger, Carsten Jentsch, Jörg Rahnenführer
Assessing the Uncertainty of the Text Generating Process Using Topic Models. PKDD/ECML Workshops (2020)
Andrea Bommert, Jörg Rahnenführer
Adjusted Measures for Feature Selection Stability for Data Sets with Similar Features. CoRR (2020)
Jonas Rieger, Lars Koppers, Carsten Jentsch, Jörg Rahnenführer
Improving Reliability of Latent Dirichlet Allocation by Assessing Its Stability Using Clustering Techniques on Replicated Runs. CoRR (2020)
Andrea Bommert, Xudong Sun, Bernd Bischl, Jörg Rahnenführer, Michel Lang
Benchmark for filter methods for feature selection in high-dimensional classification data. Comput. Stat. Data Anal. 143 (2020)
Xudong Sun, Andrea Bommert, Florian Pfisterer, Jörg Rahnenführer, Michel Lang, Bernd Bischl
High Dimensional Restrictive Federated Model Selection with multi-objective Bayesian Optimization over shifted distributions. CoRR (2019)
Xudong Sun, Andrea Bommert, Florian Pfisterer, Jörg Rahnenführer, Michel Lang, Bernd Bischl
High Dimensional Restrictive Federated Model Selection with Multi-objective Bayesian Optimization over Shifted Distributions. IntelliSys (1) (2019)
Jakob Richter, Katrin Madjar, Jörg Rahnenführer
Model-based optimization of subgroup weights for survival analysis. Bioinform. 35 (14) (2019)
Andrea Bommert, Jörg Rahnenführer, Michel Lang
A Multicriteria Approach to Find Predictive and Sparse Models with Stable Feature Selection for High-Dimensional Data. Comput. Math. Methods Medicine 2017 (2017)
Helena Kotthaus, Jakob Richter, Andreas Lang, Janek Thomas, Bernd Bischl, Peter Marwedel, Jörg Rahnenführer, Michel Lang
RAMBO: Resource-Aware Model-Based Optimization with Scheduling for Heterogeneous Runtimes and a Comparison with Asynchronous Model-Based Optimization. LION (2017)
Vera Rieder, Bernhard Blank-Landeshammer, Marleen Stuhr, Tilman Schell, Karsten Biß, Laxmikanth Kollipara, Achim Meyer, Markus Pfenninger, Hildegard Westphal, Albert Sickmann, Jörg Rahnenführer
DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs. BMC Bioinform. 18 (1) (2017)
Katrin Hainke, Sebastian Szugat, Roland Fried, Jörg Rahnenführer
Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV. BMC Bioinform. 18 (1) (2017)
Jakob Richter, Helena Kotthaus, Bernd Bischl, Peter Marwedel, Jörg Rahnenführer, Michel Lang
Faster Model-Based Optimization Through Resource-Aware Scheduling Strategies. LION (2016)
Simona Constantinescu, Ewa Szczurek, Pejman Mohammadi, Jörg Rahnenführer, Niko Beerenwinkel
TiMEx: a waiting time model for mutually exclusive cancer alterations. Bioinform. 32 (7) (2016)
Elena Erdmann, Karin Boczek, Lars Koppers, Gerret von Nordheim, Christian Pölitz, Alejandro Molina, Katharina Morik, Henrik Müller, Jörg Rahnenführer, Kristian Kersting
Machine Learning meets Data-Driven Journalism: Boosting International Understanding and Transparency in News Coverage. CoRR (2016)
Martin Eisenacher, Jörg Rahnenführer, Axel Mosig, Sven Rahmann
Poster abstracts of GCB 2015. PeerJ Prepr. 3 (2015)
Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann
Invited presentations, junior research groups and research highlights at GCB 2015. PeerJ Prepr. 3 (2015)
Kai Kammers, Michel Lang, Jan G. Hengstler, Marcus Schmidt, Jörg Rahnenführer
Survival models with preclustered gene groups as covariates. BMC Bioinform. 12 (2011)
Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
Modelling non-stationary dynamic gene regulatory processes with the BGM model. Comput. Stat. 26 (2) (2011)
Birte Hellwig, Jan G. Hengstler, Marcus Schmidt, Mathias C. Gehrmann, Wiebke Schormann, Jörg Rahnenführer
Comparison of scores for bimodality of gene expression distributions and genome-wide evaluation of the prognostic relevance of high-scoring genes. BMC Bioinform. 11 (2010)
Marco Grzegorczyk, Dirk Husmeier, Jörg Rahnenführer
Modelling Nonstationary Gene Regulatory Processes. Adv. Bioinformatics 2010 (2010)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
Going from where to why - interpretable prediction of protein subcellular localization. Bioinform. 26 (9) (2010)
Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher
YLoc - an interpretable web server for predicting subcellular localization. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Katharina Podwojski, Arno Fritsch, Daniel C. Chamrad, Wolfgang Paul, Barbara Sitek, Kai Stühler, Petra Mutzel, Christian Stephan, Helmut E. Meyer, Wolfgang Urfer, Katja Ickstadt, Jörg Rahnenführer
Retention time alignment algorithms for LC/MS data must consider non-linear shifts. Bioinform. 25 (6) (2009)
Jasmina Bogojeska, Thomas Lengauer, Jörg Rahnenführer
Stability analysis of mixtures of mutagenetic trees. BMC Bioinform. 9 (2008)
Andreas Schlicker, Fidel Ramírez, Jörg Rahnenführer, Carola Huthmacher, Alejandro Pironti, Francisco S. Domingues, Thomas Lengauer, Mario Albrecht
Applications of semantic similarity measures. Ontologies and Text Mining for Life Sciences (2008)
Jasmina Bogojeska, Adrian Alexa, André Altmann, Thomas Lengauer, Jörg Rahnenführer
Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. Bioinform. 24 (20) (2008)
Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
Conformational analysis of alternative protein structures. Bioinform. 23 (23) (2007)
Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinform. 22 (13) (2006)
Andreas Schlicker, Francisco S. Domingues, Jörg Rahnenführer, Thomas Lengauer
A new measure for functional similarity of gene products based on Gene Ontology. BMC Bioinform. 7 (2006)
Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
Estimating cancer survival and clinical outcome based on genetic tumor progression scores. Bioinform. 21 (10) (2005)
Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21 (9) (2005)
Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
Confirmation of human protein interaction data by human expression data. BMC Bioinform. 6 (2005)
Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21 (21) (2005)
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12 (6) (2005)
Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
Learning multiple evolutionary pathways from cross-sectional data. RECOMB (2004)
Jörg Rahnenführer, Daniel Bozinov
Hybrid clustering for microarray image analysis combining intensity and shape features. BMC Bioinform. 5 (2004)
Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, U. de Lichtenberg, Thomas Lengauer
Predicting protein structure classes from function predictions. Bioinform. 20 (5) (2004)
Jörg Rahnenführer
Multivariate permutation tests for the k-sample problem with clustered data. Comput. Stat. 17 (2) (2002)
Daniel Bozinov, Jörg Rahnenführer
Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering. Bioinform. 18 (5) (2002)