Timothy M. D. Ebbels

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 12

Top Topics

Temporal Dependencies

Ensemble Members

Top Venues

PLoS Comput. Biol.

Publications

Melpomeni Kasapi, Kexin Xu, Timothy M. D. Ebbels, Declan P. O'Regan, James S. Ware, Joram M. Posma
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies. Bioinform. 40 (3) (2024)
Juliette Cooke, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20 (2) (2024)
Corey Broeckling, Timothy M. D. Ebbels, Ewy Mathé, Nicola Zamboni, Cecilia Wieder
Computational Metabolomics: From Spectra to Knowledge (Dagstuhl Seminar 22181). Dagstuhl Reports 12 (5) (2022)
Cecilia Wieder, Rachel P. J. Lai, Timothy M. D. Ebbels
Single sample pathway analysis in metabolomics: performance evaluation and application. BMC Bioinform. 23 (1) (2022)
Alina Peluso, Robert C. Glen, Timothy M. D. Ebbels
Multiple-testing correction in metabolome-wide association studies. BMC Bioinform. 22 (1) (2021)
Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels, Ibrahim Karaman, Gonçalo Graça, Rui Pinto, David M. Herrington, Yue Wang, Guoqiang Yu
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection. Bioinform. 36 (9) (2020)
Takoua Jendoubi, Timothy M. D. Ebbels
Integrative analysis of time course metabolic data and biomarker discovery. BMC Bioinform. 21 (1) (2020)
Jianliang Gao, Noureddin Sadawi, Ibrahim Karaman, Jake T. M. Pearce, Pablo Moreno, Anders Larsson, Marco Capuccini, Paul Elliott, Jeremy K. Nicholson, Timothy M. D. Ebbels, Robert C. Glen
Metabolomics in the Cloud: Scaling Computational Tools to Big Data. CoRR (2019)
Marcelo P. Segura-Lepe, Hector C. Keun, Timothy M. D. Ebbels
Predictive modelling using pathway scores: robustness and significance of pathway collections. BMC Bioinform. 20 (1) (2019)
Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jimenez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck
The future of metabolomics in ELIXIR. F1000Research 6 (2017)
Diana M. Hendrickx, Hugo J. W. L. Aerts, Florian Caiment, Dominic Clark, Timothy M. D. Ebbels, Chris T. A. Evelo, Hans Gmuender, Dennie G. A. J. Hebels, Ralf Herwig, Jürgen Hescheler, Danyel G. J. Jennen, Marlon J. A. Jetten, Stathis Kanterakis, Hector C. Keun, Vera Matser, John P. Overington, Ekaterina Pilicheva, Ugis Sarkans, Marcelo P. Segura-Lepe, Isaia Sotiriadou, Timo Wittenberger, Clemens Wittwehr, Antonella Zanzi, Jos C. S. Kleinjans
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31 (9) (2015)
Yotsawat Pomyen, Marcelo Segura, Timothy M. D. Ebbels, Hector C. Keun
Over-representation of correlation analysis (ORCA): a method for identifying associations between variable sets. Bioinform. 31 (1) (2015)
Jie Hao, William J. Astle, Maria De Iorio, Timothy M. D. Ebbels
BATMAN - an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinform. 28 (15) (2012)
Maurice Berk, Timothy M. D. Ebbels, Giovanni Montana
A statistical framework for biomarker discovery in metabolomic time course data. Bioinform. 27 (14) (2011)
Rachel Cavill, Atanas Kamburov, James K. Ellis, Toby J. Athersuch, Marcus S. C. Blagrove, Ralf Herwig, Timothy M. D. Ebbels, Hector C. Keun
Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells. PLoS Comput. Biol. 7 (3) (2011)
Atanas Kamburov, Rachel Cavill, Timothy M. D. Ebbels, Ralf Herwig, Hector C. Keun
Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA. Bioinform. 27 (20) (2011)
Harriet J. Muncey, Rebecca Jones, Maria De Iorio, Timothy M. D. Ebbels
MetAssimulo: Simulation of Realistic NMR Metabolic Profiles. BMC Bioinform. 11 (2010)
H. Paul Benton, Elizabeth J. Want, Timothy M. D. Ebbels
Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data. Bioinform. 26 (19) (2010)
Elizabeth Allen, Annick Moing, Timothy M. D. Ebbels, Mickaël Maucourt, A. Deri Tomos, Dominique Rolin, Mark A. Hooks
Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst. Biol. 4 (2010)
Rachel Cavill, Hector C. Keun, Elaine Holmes, John C. Lindon, Jeremy K. Nicholson, Timothy M. D. Ebbels
Genetic algorithms for simultaneous variable and sample selection in metabonomics. Bioinform. 25 (1) (2009)
Mattias Rantalainen, Olivier Cloarec, Timothy M. D. Ebbels, Torbjörn Lundstedt, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg
Piecewise multivariate modelling of sequential metabolic profiling data. BMC Bioinform. 9 (2008)
Timothy M. D. Ebbels, Bernard F. Buxton, David T. Jones
: visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape". ISMB (Supplement of Bioinformatics) (2006)