David M. Herrington

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 6

Top Topics

Representative Set

Fully Unsupervised

Top Venues

Nat. Mach. Intell.

BMC Syst. Biol.

Publications

Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution. Bioinform. 40 (3) (2024)
Yingzhou Lu, Minjie Shen, Yue Zhao, Chenhao Li, Fan Meng, Xiao Wang, David M. Herrington, Yue Wang, Tim Fu, Capucine Van Rechem
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization. CoRR (2023)
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution. Bioinform. 38 (5) (2022)
Yue Wang, David M. Herrington
Machine intelligence enabled radiomics. Nat. Mach. Intell. 3 (10) (2021)
Chiung-Ting Wu, Yizhi Wang, Yinxue Wang, Timothy M. D. Ebbels, Ibrahim Karaman, Gonçalo Graça, Rui Pinto, David M. Herrington, Yue Wang, Guoqiang Yu
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection. Bioinform. 36 (9) (2020)
Lulu Chen, Chiung-Ting Wu, Niya Wang, David M. Herrington, Robert Clarke, Yue Wang
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues. Bioinform. 36 (12) (2020)
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring. Bioinform. 31 (2) (2015)
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks. BMC Syst. Biol. 8 (2014)
Xiguo Yuan, David J. Miller, Junying Zhang, David M. Herrington, Yue Wang
An Overview of Population Genetic Data Simulation. J. Comput. Biol. 19 (1) (2012)
David J. Miller, Yanxin Zhang, Guoqiang Yu, Yongmei Liu, Li Chen, Carl D. Langefeld, David M. Herrington, Yue Joseph Wang
An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions. Bioinform. 25 (19) (2009)
Zhiping Mu, Robert J. Plemmons, David M. Herrington, Peter Santago II
Estimation of complex ultrasonic medium responses by deconvolution. ISBI (2002)
Liexiang Fan, Peter Santago II, Huai Jiang, David M. Herrington
Ultrasound Measurement of Brachial Flow-mediated Vasodilator Response. IEEE Trans. Medical Imaging 19 (6) (2000)
Liexiang Fan, David M. Herrington, Peter Santago
3D ultrasound image segmentation using multiple incomplete feature sets. Medical Imaging: Image Processing (1999)