Eric P. Hoffman

Publication Activity (10 Years)

Years Active: 1994-2015
Publications (10 Years): 0

Top Topics

Source Separation

Biological Networks

Top Venues

J. Mach. Learn. Res.

BMC Syst. Biol.

Publications

Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring. Bioinform. 31 (2) (2015)
Yinxue Wang, Luca Bello, Yue Wang, Craig M. McDonald, Eric P. Hoffman, Guoqiang Yu
Predicting age at loss of ambulation in Duchenne muscular dystrophy with deep phenotypic measures. GlobalSIP (2014)
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks. BMC Syst. Biol. 8 (2014)
Niya Wang, Fan Meng, Li Chen, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Yue Joseph Wang
The CAM software for nonnegative blind source separation in R-Java. J. Mach. Learn. Res. 14 (1) (2013)
Chen Wang, Sook S. Ha, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme. Neurocomputing 92 (2012)
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Huai Li, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Motif-guided sparse decomposition of gene expression data for regulatory module identification. BMC Bioinform. 12 (2011)
Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Joseph Wang
analytical tool for differential network analysis. Bioinform. 27 (7) (2011)
Guoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang
analytical tool for multiclass gene selection and predictive classification. Bioinform. 27 (5) (2011)
Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
Knowledge-guided gene ranking by coordinative component analysis. BMC Bioinform. 11 (2010)
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Multilevel support vector regression analysis to identify condition-specific regulatory networks. Bioinform. 26 (11) (2010)
Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Joseph Wang
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. J. Mach. Learn. Res. 11 (2010)
Chen Wang, Sook S. Ha, Yue Joseph Wang, Jianhua Xuan, Eric P. Hoffman
Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme. ICMLA (2010)
Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinform. 25 (4) (2009)
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
Biomarker identification by knowledge-driven multilevel ICA and motif analysis. Int. J. Data Min. Bioinform. 3 (4) (2009)
Bo Hyoung Kim, Bongshin Lee, Susan Knoblach, Eric P. Hoffman, Jinwook Seo
GeneShelf: A Web-based Visual Interface for Large Gene Expression Time-Series Data Repositories. IEEE Trans. Vis. Comput. Graph. 15 (6) (2009)
Li Chen, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. Int. J. Comput. Biol. Drug Des. 2 (1) (2009)
Yitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data. BMC Bioinform. 9 (2008)
Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data. BCBGC (2008)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Motif-directed network component analysis for regulatory network inference. BMC Bioinform. 9 (S-1) (2008)
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. ISBRA (2008)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Integrative Network Component Analysis for Regulatory Network Reconstruction. ISBRA (2008)
Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. BIOCOMP (2008)
Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke
Reliability Analysis of Transcriptional Regulatory Networks. BCBGC (2008)
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinform. 9 (2008)
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. BIOCOMP (2008)
Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA (2007)
Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman
Gene Selection for Multiclass Prediction by Weighted Fisher Criterion. EURASIP J. Bioinform. Syst. Biol. 2007 (2007)
Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis. BIOCOMP (2007)
Yitan Zhu, Zuyi Wang, Yuanjian Feng, Jianhua Xuan, David J. Miller, Eric P. Hoffman, Yue Wang
Phenotypic-Specific Gene Module Discovery using a Diagnostic Tree and caBIGTM VISDA. EMBC (2006)
Ting Gong, Yitan Zhu, Jianhua Xuan, Huai Li, Robert Clarke, Eric P. Hoffman, Yue Wang
Latent Variable and nICA Modeling of Pathway Gene Module Composite. EMBC (2006)
Zuyi Wang, Yue Joseph Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data. Bioinform. 22 (6) (2006)
Jinwook Seo, Heather Gordish-Dressman, Eric P. Hoffman
An interactive power analysis tool for microarray hypothesis testing and generation. Bioinform. 22 (7) (2006)
Jinwook Seo, Eric P. Hoffman
Probe set algorithms: is there a rational best bet? BMC Bioinform. 7 (2006)
Justin Molineaux, Jianhua Xuan, Ting Gong, Yitan Zhu, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
ModVis: An information visualization tool for gene module discovery. CAINE (2006)
Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Normalization of Microarray Data by Iterative Nonlinear Regression. BIBE (2005)
Josephine Chen, Po Zhao, Donald Massaro, Linda B. Clerch, Richard R. Almon, Debra C. DuBois, William J. Jusko, Eric P. Hoffman
The PEPR GeneChip data warehouse, and implementation of a dynamic time series query tool (SGQT) with graphical interface. Nucleic Acids Res. 32 (Database-Issue) (2004)
Jinwook Seo, Marina Bakay, Yi-Wen Chen, Sara Hilmer, Ben Shneiderman, Eric P. Hoffman
Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. Bioinform. 20 (16) (2004)
Jianhua Xuan, Yibin Dong, Javed I. Khan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling. ICPR (2) (2004)
Jinwook Seo, Marina Bakay, Po Zhao, Yi-Wen Chen, Priscilla Clarkson, Ben Shneiderman, Eric P. Hoffman
Interactive color mosaic and dendrogram displays for signal/noise optimization in microarray data analysis. ICME (2003)
Rehannah H. A. Borup, Stefano Toppo, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle, Eric P. Hoffman
Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs. BMC Bioinform. 3 (2002)
Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, Po Zhao, Kanneboyina Nagaraju, Eric P. Hoffman
Sources of variability and effect of experimental approach on expression profiling data interpretation. BMC Bioinform. 3 (2002)
Dhiraj K. Pathak, Eric P. Hoffman, Mark W. Perlin
Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers. ISMB (1994)