Chen Wang

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 11

Top Topics

Biologically Meaningful

Data Repositories

High Throughput Sequencing

Top Venues

BMC Medical Informatics Decis. Mak.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. J. Am. Medical Informatics Assoc. 31 (2) (2024)
Hanxuan Ye, Xianyang Zhang, Chen Wang, Ellen L. Goode, Jun Chen
Batch-effect correction with sample remeasurement in highly confounded case-control studies. Nat. Comput. Sci. 3 (8) (2023)
Yiqing Zhao, Matthew Brush, Chen Wang, Alex H. Wagner, Hongfang Liu, Robert R. Freimuth
Leveraging a pharmacogenomics knowledgebase to formulate a drug response phenotype terminology for genomic medicine. Bioinform. 38 (23) (2022)
Yanbo Guo, Chen Wang, Raymond M. Moore, Hongfang Liu, Feichen Shen
POKR: Building a Computable Heterogeneous Knowledge Resource for Precision Oncology. MedInfo (2021)
Tianshu Feng, Jaime I. Dávila, Yuanhang Liu, Sangdi Lin, Shuai Huang, Chen Wang
Semi-Supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (4) (2021)
Audrey Mitchell, Marco Ruiz, Soua Yang, Chen Wang, Jaime I. Dávila
Excerno: Filtering Mutations Caused by the Clinical Archival Process in Sequencing Data. ICCABS (2021)
Yiqing Zhao, Saravut J. Weroha, Ellen L. Goode, Hongfang Liu, Chen Wang
Generating real-world evidence from unstructured clinical notes to examine clinical utility of genetic tests: use case in BRCAness. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Zachary Stephens, Chen Wang, Ravishankar K. Iyer, Jean-Pierre A. Kocher
Detection and visualization of complex structural variants from long reads. BMC Bioinform. (20) (2018)
Chen Wang, Raymond M. Moore, Jared Evans, Xiao-Nan Hou, S. John Weroha, Guoqian Jiang
Building a Research-Quality Copy Number Variation Data Repository for Translational Research. Poly/DMAH@VLDB (2018)
Zachary D. Stephens, Ravishankar K. Iyer, Chen Wang, Jean-Pierre A. Kocher
Unraveling complex local genomic rearrangements from long-read data. BIBM (2017)
Na Hong, Zheng Li, Richard C. Kiefer, Melissa S. Robertson, Ellen L. Goode, Chen Wang, Guoqian Jiang
Building an i2b2-Based Integrated Data Repository for Cancer Research: A Case Study of Ovarian Cancer Registry. DMAH@VLDB (2016)
Chen Wang, Jared Evans, Aditya Bhagwate, Naresh Prodduturi, Vivekananda Sarangi, Mridu Middha, Hugues Sicotte, Peter T. Vedell, Steven N. Hart, Gavin R. Oliver, Jean-Pierre A. Kocher, Matthew J. Maurer, Anne J. Novak, Susan L. Slager, James R. Cerhan, Yan W. Asmann
PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data. Bioinform. 30 (18) (2014)
Chen Wang, Jaime I. Dávila, Saurabh Baheti, Aditya Bhagwate, Xue Wang, Jean-Pierre A. Kocher, Susan L. Slager, Andrew L. Feldman, Anne J. Novak, James R. Cerhan, E. Aubrey Thompson, Yan W. Asmann
RVboost: RNA-seq variants prioritization using a boosting method. Bioinform. 30 (23) (2014)
Jinghua Gu, Jianhua Xuan, Chen Wang, Li Chen, Tian-Li Wang, Ie-Ming Shih
Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm. CIBCB (2012)
Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. ISBRA (2012)
Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Joseph Wang
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge. Signal Process. 92 (8) (2012)
Chen Wang, Sook S. Ha, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman
Computational analysis of muscular dystrophy sub-types using a novel integrative scheme. Neurocomputing 92 (2012)
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
GIST: A Gibbs sampler to identify intracellular signal transduction pathways. EMBC (2011)
Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
Knowledge-guided gene ranking by coordinative component analysis. BMC Bioinform. 11 (2010)
Chen Wang, Sook S. Ha, Yue Joseph Wang, Jianhua Xuan, Eric P. Hoffman
Computational Analysis of Muscular Dystrophy Sub-types Using a Novel Integrative Scheme. ICMLA (2010)
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
Biomarker identification by knowledge-driven multilevel ICA and motif analysis. Int. J. Data Min. Bioinform. 3 (4) (2009)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Motif-directed network component analysis for regulatory network inference. BMC Bioinform. 9 (S-1) (2008)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Integrative Network Component Analysis for Regulatory Network Reconstruction. ISBRA (2008)
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinform. 9 (2008)