Robert Clarke

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 24

Top Topics

Visual Odometry

Fully Unsupervised

Gene Expression

Top Venues

Frontiers Robotics AI

Publications

Chiung-Ting Wu, Dongping Du, Lulu Chen, Rujia Dai, Chunyu Liu, Guoqiang Yu, Saurabh Bhardwaj, Sarah J. Parker, Zhen Zhang, Robert Clarke, David M. Herrington, Yue Wang
CAM3.0: determining cell type composition and expression from bulk tissues with fully unsupervised deconvolution. Bioinform. 40 (3) (2024)
Robert Clarke, Liam Fletcher, Sebastian East, Thomas Richardson
Reinforcement Learning Derived High-Alpha Aerobatic Manoeuvres for Fixed Wing Operation in Confined Spaces. Algorithms 16 (8) (2023)
Madhumita Srinivasan, Robert Clarke, Pavel Kraikivski
Mathematical Models of Death Signaling Networks. Entropy 24 (10) (2022)
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution. Bioinform. 38 (5) (2022)
Matthew Chun, Robert Clarke, Benjamin J. Cairns, David A. Clifton, Derrick Bennett, Yiping Chen, Yu Guo, Pei Pei, Jun Lv, Canqing Yu, Ling Yang, Liming Li, Zhengming Chen, Tingting Zhu
Stroke risk prediction using machine learning: a prospective cohort study of 0.5 million Chinese adults. J. Am. Medical Informatics Assoc. 28 (8) (2021)
Xu Shi, Andrew F. Neuwald, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles. Bioinform. 37 (5) (2021)
Xi Chen, Xu Shi, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach. BMC Bioinform. 22 (1) (2021)
Xi Chen, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements. PLoS Comput. Biol. 17 (7) (2021)
Lulu Chen, Chiung-Ting Wu, Niya Wang, David M. Herrington, Robert Clarke, Yue Wang
debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues. Bioinform. 36 (12) (2020)
Kieran Wood, Emma J. Liu, Tom Richardson, Robert Clarke, Jim Freer, Alessandro Aiuppa, Gaetano Giudice, Marcello Bitetto, Kila Mulina, Ima Itikarai
BVLOS UAS Operations in Highly-Turbulent Volcanic Plumes. Frontiers Robotics AI 7 (2020)
Liam Brown, Robert Clarke, Aliakbar Akbari, Ujjar Bhandari, Sara Bernardini, Puneet S. Chhabra, Ognjen Marjanovic, Thomas Richardson, Simon Watson
The Design of Prometheus: A Reconfigurable UAV for Subterranean Mine Inspection. Robotics 9 (4) (2020)
Alexander McConville, Laurie Bose, Robert Clarke, Walterio W. Mayol-Cuevas, Jianing Chen, Colin Greatwood, Stephen J. Carey, Piotr Dudek, Thomas Richardson
Visual Odometry Using Pixel Processor Arrays for Unmanned Aerial Systems in GPS Denied Environments. Frontiers Robotics AI 7 (2020)
Ben Schellenberg, Tom Richardson, Arthur Richards, Robert Clarke, Matt Watson
On-Board Real-Time Trajectory Planning for Fixed Wing Unmanned Aerial Vehicles in Extreme Environments. Sensors 19 (19) (2019)
Ben Schellenberg, Tom Richardson, Matt Watson, Colin Greatwood, Robert Clarke, Rick Thomas, Kieran Wood, Jim Freer, Helen Thomas, Emma J. Liu, Francis Salama, Gustavo Chigna
Remote sensing and identification of volcanic plumes using fixed-wing UAVs over Volcán de Fuego, Guatemala. J. Field Robotics 36 (7) (2019)
Xi Chen, Jinghua Gu, Xiao Wang, Jin-Gyoung Jung, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data. Bioinform. 34 (10) (2018)
Xu Shi, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data. Bioinform. 34 (1) (2018)
Xi Chen, Xu Shi, Leena Hilakivi-Clarke, Ayesha N. Shajahan-Haq, Robert Clarke, Jianhua Xuan
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification. Bioinform. 33 (2) (2017)
Xiao Wang, Jinghua Gu, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency. Bioinform. 33 (2) (2017)
Yanting Shen, Yang Yang, Sarah Parish, Zhengming Chen, Robert Clarke, David A. Clifton
Risk prediction for cardiovascular disease using ECG data in the China kadoorie biobank. EMBC (2016)
Ibrahim Youssef, Robert Clarke, Ie-Ming Shih, Yue Joseph Wang, Guoqiang Yu
Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants. Comput. Biol. Medicine 77 (2016)
Krithika Bhuvaneshwar, Anas Belouali, Varun Singh, Robert M. Johnson, Lei Song, Adil Alaoui, Michael Harris, Robert Clarke, Louis M. Weiner, Yuriy Gusev, Subha Madhavan
- an integrative bioinformatics platform for precision medicine. BMC Bioinform. 17 (2016)
Xu Shi, Robert O. Barnes, Li Chen, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Yue Joseph Wang, Jianhua Xuan
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method. Bioinform. 31 (14) (2015)
Niya Wang, Ting Gong, Robert Clarke, Lulu Chen, Ie-Ming Shih, Zhen Zhang, Douglas A. Levine, Jianhua Xuan, Yue Joseph Wang
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples. Bioinform. 31 (1) (2015)
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring. Bioinform. 31 (2) (2015)
Xiao Wang, Jinghua Gu, Jianhua Xuan, Robert Clarke, Leena Hilakivi-Clarke
A Markov random field-based Bayesian model to identify genes with differential methylation. CIBCB (2014)
Bai Zhang, Xuchu Hou, Xiguo Yuan, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Roger R. Wang, Yi Fu, Subha Madhavan, Yue Joseph Wang, Guoqiang Yu
AISAIC: a software suite for accurate identification of significant aberrations in cancers. Bioinform. 30 (3) (2014)
Xi Chen, Xu Shi, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data. EMBC (2014)
Ye Tian, Sean S. Wang, Zhen Zhang, Olga C. Rodriguez, Emanuel Petricoin III, Ie-Ming Shih, Daniel Chan, Maria Avantaggiati, Guoqiang Yu, Shaozhen Ye, Robert Clarke, Chao Wang, Bai Zhang, Yue Joseph Wang, Chris Albanese
Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses. IEEE ACM Trans. Comput. Biol. Bioinform. 11 (6) (2014)
Jinghua Gu, Xiao Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data. BMC Bioinform. 15 (S-9) (2014)
Thomas Lancaster, Robert Clarke
An Observational Analysis of the Range and Extent of Contract Cheating from Online Courses Found on Agency Websites. CISIS (2014)
Thomas Lancaster, Robert Clarke
An Initial Analysis of the Contextual Information Available within Auction Posts on Contract Cheating Agency Websites. AINA Workshops (2014)
Jinghua Gu, Jianhua Xuan, Rebecca B. Riggins, Li Chen, Yue Joseph Wang, Robert Clarke
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic. Bioinform. 30 (15) (2014)
Xi Chen, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments. BIOINFORMATICS (2014)
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks. BMC Syst. Biol. 8 (2014)
Xu Shi, Jinghua Gu, Xi Chen, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks. BMC Syst. Biol. 7 (S-5) (2013)
Yuji Zhang, Jianhua Xuan, Robert Clarke, Habtom W. Ressom
Module-based breast cancer classification. Int. J. Data Min. Bioinform. 7 (3) (2013)
Xi Chen, Jianhua Xuan, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke
A novel statistical approach to identify co-regulatory gene modules. BIBM (2013)
Jinghua Gu, Jianhua Xuan, Xiao Wang, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke
Reconstructing transcriptional regulatory networks by probabilistic network component analysis. BCB (2013)
Robert Clarke, Thomas Lancaster
Commercial aspects of contract cheating. ITiCSE (2013)
Xi Chen, Jianhua Xuan, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke
Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (6) (2013)
Niya Wang, Fan Meng, Li Chen, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Yue Joseph Wang
The CAM software for nonnegative blind source separation in R-Java. J. Mach. Learn. Res. 14 (1) (2013)
Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan
Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis. ISBRA (2012)
Jinghua Gu, Jianhua Xuan, Rebecca B. Riggins, Li Chen, Yue Joseph Wang, Robert Clarke
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic. Bioinform. 28 (15) (2012)
Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Joseph Wang
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge. Signal Process. 92 (8) (2012)
Xuchu Hou, Guoqiang Yu, Xiguo Yuan, Bai Zhang, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Subha Madhavan
Accurate identification of significant aberrations in contaminated cancer genome. GENSiPS (2012)
Xiao Wang, Jinghua Gu, Jianhua Xuan, Ayesha N. Shajahan, Robert Clarke, Li Chen
Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network. ICMLA (2) (2012)
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
GIST: A Gibbs sampler to identify intracellular signal transduction pathways. EMBC (2011)
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Huai Li, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Motif-guided sparse decomposition of gene expression data for regulatory module identification. BMC Bioinform. 12 (2011)
Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Joseph Wang
analytical tool for differential network analysis. Bioinform. 27 (7) (2011)
Guoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang
analytical tool for multiclass gene selection and predictive classification. Bioinform. 27 (5) (2011)
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Robert Clarke, Yue Joseph Wang
Identifying cancer biomarkers by network-constrained support vector machines. BMC Syst. Biol. 5 (2011)
Jinghua Gu, Jianhua Xuan, Yue Joseph Wang, Rebecca B. Riggins, Robert Clarke
Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic. ICMLA (2010)
Chen Wang, Jianhua Xuan, Huai Li, Yue Joseph Wang, Ming Zhan, Eric P. Hoffman, Robert Clarke
Knowledge-guided gene ranking by coordinative component analysis. BMC Bioinform. 11 (2010)
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Multilevel support vector regression analysis to identify condition-specific regulatory networks. Bioinform. 26 (11) (2010)
Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Joseph Wang
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. J. Mach. Learn. Res. 11 (2010)
Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom
Module-based biomarker discovery in breast cancer. BIBM (2010)
Bai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Differential dependency network analysis to identify condition-specific topological changes in biological networks. Bioinform. 25 (4) (2009)
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
Biomarker identification by knowledge-driven multilevel ICA and motif analysis. Int. J. Data Min. Bioinform. 3 (4) (2009)
Li Chen, Jianhua Xuan, Yue Joseph Wang, Eric P. Hoffman, Rebecca B. Riggins, Robert Clarke
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. Int. J. Comput. Biol. Drug Des. 2 (1) (2009)
Ting Gong, Jianhua Jason Xuan, Rebecca B. Riggins, Robert Clarke
A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks. IJCBS (2009)
Li Chen, Jianhua Xuan, Yue Joseph Wang, Rebecca B. Riggins, Robert Clarke
Network-Constrained Support Vector Machine for Classification. ICMLA (2008)
Yitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data. BMC Bioinform. 9 (2008)
Hongfang Liu, Xin Li, Victoria Y. Yoon, Robert Clarke
Annotating breast cancer microarray samples using ontologies. AMIA (2008)
Jianghui Xiong, Chen Wang, Bai Zhang, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke, Jianhua Xuan
Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA Profiling Data. BCBGC (2008)
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP (2008)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Motif-directed network component analysis for regulatory network inference. BMC Bioinform. 9 (S-1) (2008)
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information. ISBRA (2008)
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman
Integrative Network Component Analysis for Regulatory Network Reconstruction. ISBRA (2008)
Ting Gong, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Exploring Transcriptional Modules Through Integrative Gene Clustering Guided by Transcription Factor Binding Information. BIOCOMP (2008)
Chen Wang, Jianhua Xuan, Li Chen, Eric P. Hoffman, Robert Clarke
Reliability Analysis of Transcriptional Regulatory Networks. BCBGC (2008)
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinform. 9 (2008)
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinform. 9 (2008)
Li Chen, Jianhua Xuan, Rebecca B. Riggins, Yue Joseph Wang, Eric P. Hoffman, Robert Clarke
Identification of Condition-specific Regulatory Modules by Multi-level Motif and mRNA Expression Analysis. BIOCOMP (2008)
Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA (2007)
Jiajing Wang, Huai Li, Yitan Zhu, Malik Yousef, Michael Nebozhyn, Michael M. Showe, Louise C. Showe, Jianhua Xuan, Robert Clarke, Yue Joseph Wang
analytical tool for data clustering and beyond. Bioinform. 23 (15) (2007)
Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman
Gene Selection for Multiclass Prediction by Weighted Fisher Criterion. EURASIP J. Bioinform. Syst. Biol. 2007 (2007)
Chen Wang, Jianhua Xuan, Ting Gong, Robert Clarke, Eric P. Hoffman, Yue Joseph Wang
Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis. BIOCOMP (2007)
Ting Gong, Yitan Zhu, Jianhua Xuan, Huai Li, Robert Clarke, Eric P. Hoffman, Yue Wang
Latent Variable and nICA Modeling of Pathway Gene Module Composite. EMBC (2006)
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB (2006)
Zuyi Wang, Yue Joseph Wang, Jianhua Xuan, Yibin Dong, Marina Bakay, Yuanjian Feng, Robert Clarke, Eric P. Hoffman
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data. Bioinform. 22 (6) (2006)
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence. EMBC (2006)
Justin Molineaux, Jianhua Xuan, Ting Gong, Yitan Zhu, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
ModVis: An information visualization tool for gene module discovery. CAINE (2006)
Angela S. L. Wong, Matthew Sorell, Robert Clarke
Secure Mutual Distrust Transaction Tracking Using Cryptographic Elements. IWDW (2005)
Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Normalization of Microarray Data by Iterative Nonlinear Regression. BIBE (2005)
Jianhua Xuan, Yibin Dong, Javed I. Khan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang
Robust Feature Selection by Weighted Fisher Criterion for Multiclass Prediction in Gene Expression Profiling. ICPR (2) (2004)
Junying Zhang, Yue Joseph Wang, Javed I. Khan, Robert Clarke
Gene selection in class space for molecular classification of cancer. Sci. China Ser. F Inf. Sci. 47 (3) (2004)
Zuyi Wang, Yue Joseph Wang, Jianping Lu, Sun-Yuan Kung, Junying Zhang, Richard Lee, Jianhua Xuan, Javed I. Khan, Robert Clarke
Discriminatory Mining of Gene Expression Microarray Data. J. VLSI Signal Process. 35 (3) (2003)
Yue Joseph Wang, Junying Zhang, Javed I. Khan, Robert Clarke, Zhiping Gu
Partially-independent component analysis for tissue heterogeneity correction in microarray gene expression analysis. NNSP (2003)
Yue Joseph Wang, Jianping Lu, Richard Lee, Zhiping Gu, Robert Clarke
Iterative normalization of cDNA microarray data. IEEE Trans. Inf. Technol. Biomed. 6 (1) (2002)