Habtom W. Ressom

ORCID

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 16

Top Venues

BIBM

EMBC

BMC Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Kaiserslautern University of Technology, Germany (PHD)

Education History

Kaiserslautern University of Technology, Germany

PHD

Publications

Hoi Yan Katharine Chau, Hongyu Ao, Xinran Zhang, Shijinqiu Gao, Rency S. Varghese, Habtom W. Ressom
Deep Learning Based Metabolite Annotation. EMBC (2023)
Yichen Guo, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom
Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. BIBM (2023)
Sidharth S. Jain, Megan E. Barefoot, Rency S. Varghese, Habtom W. Ressom
Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. BIBM (2022)
Marie Denis, Rency S. Varghese, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom
A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. EMBC (2022)
Yifan Chen, Megan E. Barefoot, Rency S. Varghese, Kuijun Wang, Cristina Di Poto, Habtom W. Ressom
Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. EMBC (2020)
Rency S. Varghese, Yuan Zhou, Yifan Chen, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom
Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. EMBC (2020)
Megan E. Barefoot, Yifan Chen, Rency S. Varghese, Yuan Zhou, Habtom W. Ressom
Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. BIBM (2019)
Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, Cristina Di Poto, Alessia Ferrarini, Habtom W. Ressom
Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. EMBC (2019)
Ziling Fan, Yuan Zhou, Habtom W. Ressom
MOTA: Multi-omic integrative analysis for biomarker discovery. EMBC (2019)
Ziling Fan, Kian Ghaffari, Amber Alley, Habtom W. Ressom
Metabolite Identification Using Artificial Neural Network. BIBM (2019)
Zhenzhi Li, Yiming Zuo, Chaohui Xu, Rency S. Varghese, Habtom W. Ressom
INDEED: R package for network based differential expression analysis. BIBM (2018)
Yiming Zuo, Yi Cui, Guoqiang Yu, Ruijiang Li, Habtom W. Ressom
Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. BMC Bioinform. 18 (1) (2017)
Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang, Sandra A. Jablonski, Mariaelena Pierobon, Emanuel F. Petricoin, Habtom W. Ressom, Louis M. Weiner
Network-based analysis of reverse phase protein array data. BIBM (2016)
Minkun Wang, Cristina Di Poto, Alessia Ferrarini, Guoqiang Yu, Habtom W. Ressom
Metabolomic data deconvolution using probabilistic purification models. BIBM (2016)
Habtom W. Ressom, Cristina Di Poto, Alessia Ferrarini, Yunli Hu, Mohammad R. Nezami Ranjbar, Ehwang Song, Rency S. Varghese, Minkun Wang, Shiyue Zhou, Rui Zhu, Yiming Zuo, Mahlet G. Tadesse, Yehia Mechref
Multi-omic approaches for characterization of hepatocellular carcinoma. EMBC (2016)
Minkun Wang, Guoqiang Yu, Habtom W. Ressom
Integrative Analysis of Proteomic, Glycomic, and Metabolomic Data for Biomarker Discovery. IEEE J. Biomed. Health Informatics 20 (5) (2016)
Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Minkun Wang, Tsung-Heng Tsai, Guoqiang Yu, Habtom W. Ressom
Purification of LC/GC-MS based biomolecular expression profiles using a topic model. BIBM (2015)
Yiming Zuo, Guoqiang Yu, Habtom W. Ressom
Integrating prior biological knowledge and graphical LASSO for network inference. BIBM (2015)
Minkun Wang, Guoqiang Yu, Habtom W. Ressom
Integrative analysis of LC-MS based glycomic and proteomic data. EMBC (2015)
Mohammad R. Nezami Ranjbar, Cristina Di Poto, Yue Joseph Wang, Habtom W. Ressom
SIMAT: GC-SIM-MS data analysis tool. BMC Bioinform. 16 (2015)
Yiming Zuo, Guoqiang Yu, Chi Zhang, Habtom W. Ressom
A new approach for multi-omic data integration. BIBM (2014)
Minkun Wang, Guoqiang Yu, Yehia Mechref, Habtom W. Ressom
GPA: An algorithm for LC/MS based glycan profile annotation. BIBM (2013)
Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
Profile-Based LC-MS Data Alignment-A Bayesian Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (2) (2013)
Yuji Zhang, Jianhua Xuan, Robert Clarke, Habtom W. Ressom
Module-based breast cancer classification. Int. J. Data Min. Bioinform. 7 (3) (2013)
Yiming Zuo, Guoqiang Yu, Mahlet G. Tadesse, Habtom W. Ressom
Reconstructing biological networks using low order partial correlation. BIBM (2013)
Tsung-Heng Tsai, Mahlet G. Tadesse, Cristina Di Poto, Lewis K. Pannell, Yehia Mechref, Yue Joseph Wang, Habtom W. Ressom
Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards. Bioinform. 29 (21) (2013)
Jinlian Wang, Hongyan Yuan, Mahlet G. Tadesse, Habtom W. Ressom
Integration of multiple data sources for identifying functional modules using Bayesian network. GENSiPS (2012)
Mohammad R. Nezami Ranjbar, Yi Zhao, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
Evaluation of normalization methods for analysis of LC-MS data. BIBM Workshops (2012)
Yi Zhao, Tsung-Heng Tsai, Cristina Di Poto, Lewis K. Pannell, Mahlet G. Tadesse, Habtom W. Ressom
Variability assessment of LC-MS experiments and its application to experimental design and difference detection. GENSiPS (2012)
Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
Normalization of LC-MS data using Gaussian process. GENSiPS (2012)
Jinlian Wang, Yuji Zhang, Catalin Marian, Habtom W. Ressom
Identification of aberrant pathways and network activities from high-throughput data. Briefings Bioinform. 13 (4) (2012)
Jinlian Wang, Habtom W. Ressom
Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. BIBM Workshops (2011)
Mohammad R. Nezami Ranjbar, Yue Joseph Wang, Habtom W. Ressom
Quality assessment of LC-MS metabolomic data. BIBM Workshops (2011)
Getachew K. Befekadu, Mahlet G. Tadesse, Tsung-Heng Tsai, Habtom W. Ressom
Probabilistic Mixture Regression Models for Alignment of LC-MS Data. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (5) (2011)
Bin Zhou, Jun Feng Xiao, Habtom W. Ressom
A Computational Pipeline for LC-MS/MS Based Metabolite Identification. BIBM (2011)
Rency S. Varghese, Bin Zhou, Habtom W. Ressom
Meta-analysis of LC-MS based metabolomic experiments. BIBM Workshops (2011)
Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom
Bayesian Alignment Model for LC-MS Data. BIBM (2011)
Michael F. Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman
Workshop Introduction. Pacific Symposium on Biocomputing (2011)
Zhiqun Tang, Lihua Zhang, Amrita K. Cheema, Habtom W. Ressom
A new method for alignment of LC-MALDI-TOF data. BIBM (2010)
Leepika Tuli, Tsung-Heng Tsai, Rency S. Varghese, Amrita K. Cheema, Habtom W. Ressom
Using a spike-in experiment to evaluate analysis of LC-MS data. BIBM Workshops (2010)
Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Habtom W. Ressom, Amrita K. Cheema, Bhaskar Kallakury
Metabolomic profiling for biomarker discovery in pancreatic cancer. BIBM (2010)
Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom
Module-based biomarker discovery in breast cancer. BIBM (2010)
Michael F. Ochs, John Quackenbush, Ramana Davuluri, Habtom W. Ressom
Session Introduction. Pacific Symposium on Biocomputing (2009)
Habtom W. Ressom, Getachew K. Befekadu, Mahlet G. Tadesse
Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen). Autom. 57 (9) (2009)
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP (2008)
Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman
Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. Pacific Symposium on Biocomputing (2008)
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinform. 9 (2008)
Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom
Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. BIOCOMP (2008)
Mohamad T. Musavi, Habtom W. Ressom, S. Srirangam, Padma Natarajan, R. W. Virnstein, L. J. Morris, W. Tweedale
Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon. J. Intell. Inf. Syst. 29 (1) (2007)
Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinform. 23 (5) (2007)
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke
Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB (2006)
Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. EMBC (2006)
Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke
Inferring Network Interactions Using Recurrent Neural Networks and Swarm Intelligence. EMBC (2006)
Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. CIBCB (2006)
Habtom W. Ressom, Kevin Turner, Mohamad T. Musavi
Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks. IJCNN (2006)
Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi
Applications of fuzzy logic in genomics. Fuzzy Sets Syst. 152 (1) (2005)
Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
Particle swarm optimization for analysis of mass spectral serum profiles. GECCO (2005)
Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman
Analysis of mass spectral serum profiles for biomarker selection. Bioinform. 21 (21) (2005)
Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman
Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. CIBCB (2005)
Wayne H. Slade Jr., Richard L. Miller, Habtom W. Ressom, Padma Natarajan
Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance. Neural Networks and Computational Intelligence (2004)
Habtom W. Ressom, S. K. Fyfe, S. Srirangam, Mohamad T. Musavi, Padma Natarajan
Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks. Neural Networks and Computational Intelligence (2004)
Rency Susan Varghese, Mohamad T. Musavi, Habtom W. Ressom
A fuzzy confidence value for DNA bases. FUZZ-IEEE (2004)
Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller
Inversion of ocean color observations using particle swarm optimization. IEEE Trans. Geosci. Remote. Sens. 42 (9) (2004)
Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller
Ocean color inversion by particle swarm optimization. IEEE Congress on Evolutionary Computation (2004)
Habtom W. Ressom, Dali Wang, Padma Natarajan
Adaptive double self-organizing maps for clustering gene expression profiles. Neural Networks 16 (5-6) (2003)
Habtom W. Ressom, Dali Wang, Padma Natarajan
Computational Methods for Identifying Number of Clusters in Gene Expression Data. Neural Networks and Computational Intelligence (2003)
Habtom W. Ressom, Dali Wang, Rency S. Varghese, Robert Reynolds
Fuzzy logic-based gene regulatory network. FUZZ-IEEE (2003)
Ning Xiong, Lothar Litz, Habtom W. Ressom
Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems. Knowl. Inf. Syst. 4 (1) (2002)
Dali Wang, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru
Double self-organizing maps to cluster gene expression data. ESANN (2002)
Robert Reynolds, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru
Improving robustness of fuzzy gene modeling. ESANN (2002)
Mohamad T. Musavi, Habtom W. Ressom, Ross Hinkle, Richard L. Miller
Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon. DG.O (2002)
Habtom W. Ressom, Holger Voos, Lothar Litz, Peter Schmitt
On-line estimation of key quality parameters in nonwoven production. SMC (2000)
Habtom W. Ressom
Modeling a compression plant using recurrent neural networks. IJCNN (1999)
Habtom W. Ressom
Modeling a Refrigeration System Using Recurrent Neural Networks. Fuzzy Days (1999)
Habtom W. Ressom, Lothar Litz
Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs. ICANN (1997)

Habtom W. Ressom.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Habtom W. Ressom