Xiguo Yuan

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 25

Top Topics

Differential Evolution

Top Venues

Digit. Signal Process.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Jingfen Lan, Wenxiang Chen, Ganggang Yin, Haque A. K. Alvi, Kun Xie, Qiang Yu, Xiguo Yuan
LDSSNV: A Linkage Disequilibrium-Based Method for the Detection of Somatic Single-Nucleotide Variants. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Kun Xie, Kang Liu, Haque A. K. Alvi, Wenyue Ji, Shuzhen Wang, Liang Chang, Xiguo Yuan
IhybCNV: An intra-hybrid approach for CNV detection from next-generation sequencing data. Digit. Signal Process. 121 (2022)
Haque A. K. Alvi, Kun Xie, Kang Liu, Haiyong Zhao, Xiaohui Yang, Xiguo Yuan
Detection of copy number variations from NGS data by using an adaptive kernel density estimation-based outlier factor. Digit. Signal Process. 126 (2022)
Liying Yang, Qingyang Zhang, Si Chao, Dunhui Liu, Xiguo Yuan
Greedy-mRMR: An emotion recognition algorithm based on EEG using greedy algorithm. BIBM (2022)
Chao Wei, Junying Zhang, Xiguo Yuan
Enhancing the prediction of protein coding regions in biological sequence via a deep learning framework with hybrid encoding. Digit. Signal Process. 123 (2022)
Xiguo Yuan, Jiaao Yu, Jianing Xi, Liying Yang, Junliang Shang, Zhe Li, Junbo Duan
CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Xiguo Yuan, Chao Ma, Haiyong Zhao, Liying Yang, Shuzhen Wang, Jianing Xi
STIC: Predicting Single Nucleotide Variants and Tumor Purity in Cancer Genome. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Chao Wei, Junying Zhang, Xiguo Yuan
DeepTIS: Improved translation initiation site prediction in genomic sequence via a two-stage deep learning model. Digit. Signal Process. 117 (2021)
Chao Wei, Junying Zhang, Xiguo Yuan, Zongzhen He, Guojun Liu, Jinhui Wu
NeuroTIS: Enhancing the prediction of translation initiation sites in mRNA sequences via a hybrid dependency network and deep learning framework. Knowl. Based Syst. 212 (2021)
Xiguo Yuan, Xiangyan Xu, Haiyong Zhao, Junbo Duan
ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Xiguo Yuan, Junping Li, Jun Bai, Jianing Xi
A Local Outlier Factor-Based Detection of Copy Number Variations From NGS Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (5) (2021)
Xiguo Yuan, Wenlu Xie, Hongzhi Yang, Jun Bai, Ruwu Yang, Guojun Liu, Haque A. K. Alvi
Detection and inference of interspersed duplicated insertions from paired-end reads. Digit. Signal Process. 111 (2021)
Guojun Liu, Xiguo Yuan, Junying Zhang, Haiyong Zhao, Junping Li, Junbo Duan
CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data. IEEE Access 8 (2020)
Yaoyao Li, Junying Zhang, Xiguo Yuan, Junping Li
dpGMM: A Dirichlet Process Gaussian Mixture Model for Copy Number Variation Detection in Low-Coverage Whole-Genome Sequencing Data. IEEE Access 8 (2020)
Jianing Xi, Xiguo Yuan, Minghui Wang, Ao Li, Xuelong Li, Qinghua Huang
Inferring subgroup-specific driver genes from heterogeneous cancer samples via subspace learning with subgroup indication. Bioinform. 36 (6) (2020)
Lanling Zhao, Han Liu, Xiguo Yuan, Kun Gao, Junbo Duan
Comparative study of whole exome sequencing-based copy number variation detection tools. BMC Bioinform. 21 (1) (2020)
Xiguo Yuan, Jun Bai, Junying Zhang, Liying Yang, Junbo Duan, Yaoyao Li, Meihong Gao
CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Xiguo Yuan, Meihong Gao, Jun Bai, Junbo Duan
SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Yaoyao Li, Junying Zhang, Xiguo Yuan
BagGMM: Calling copy number variation by bagging multiple Gaussian mixture models from tumor and matched normal next-generation sequencing data. Digit. Signal Process. 88 (2019)
Yajun Liu, Junying Zhang, Aimin Li, Yuanyuan Zhang, Yaoyao Li, Xiguo Yuan, Zhongzhen He, Zhaowen Liu, Shouheng Tuo
Identification of PIWI-interacting RNA modules by weighted correlation network analysis. Clust. Comput. 22 (Suppl 1) (2019)
Qian Ding, Junliang Shang, Yan Sun, Guangshuai Liu, Feng Li, Xiguo Yuan, Jin-Xing Liu
NIPMI: A Network Method Based on Interaction Part Mutual Information to Detect Characteristic Genes From Integrated Data on Multi-Cancers. IEEE Access 7 (2019)
Shouheng Tuo, Junying Zhang, Xiguo Yuan, Longquan Yong
A new differential evolution algorithm for solving multimodal optimization problems with high dimensionality. Soft Comput. 22 (13) (2018)
Xiguo Yuan, Junying Zhang, Liying Yang
IntSIM: An Integrated Simulator of Next-Generation Sequencing Data. IEEE Trans. Biomed. Eng. 64 (2) (2017)
Liying Yang, Yunyan Shen, Xiguo Yuan, Junying Zhang, Jianhua Wei
Analysis of breast cancer subtypes by AP-ISA biclustering. BMC Bioinform. 18 (1) (2017)
Shouheng Tuo, Junying Zhang, Longquan Yong, Xiguo Yuan, Baobao Liu, Xiaoyang Xu, Fang'an Deng
A harmony search algorithm for high-dimensional multimodal optimization problems. Digit. Signal Process. 46 (2015)
Bai Zhang, Xuchu Hou, Xiguo Yuan, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Roger R. Wang, Yi Fu, Subha Madhavan, Yue Joseph Wang, Guoqiang Yu
AISAIC: a software suite for accurate identification of significant aberrations in cancers. Bioinform. 30 (3) (2014)
Xiaohan Sun, Junying Zhang, Aimin Li, Xiguo Yuan
mirPD: A pattern-based approach for identifying microRNAs from deep sequencing data. Digit. Signal Process. 23 (6) (2013)
Xiguo Yuan, David J. Miller, Junying Zhang, David M. Herrington, Yue Wang
An Overview of Population Genetic Data Simulation. J. Comput. Biol. 19 (1) (2012)
Xuchu Hou, Guoqiang Yu, Xiguo Yuan, Bai Zhang, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Subha Madhavan
Accurate identification of significant aberrations in contaminated cancer genome. GENSiPS (2012)
Haidong Fu, Xiguo Yuan, Kui Zhang, Xiaolong Zhang, Qi Xie
Investigating Novel Immune-Inspired Multi-agent Systems for Anomaly Detection. APSCC (2007)